Detailed information on CNT3017824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 9e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524187Zea maysSetaria italica59.3239.9792.34261forward
CNT30641519Zea maysNymphaea colorata37.0518.481.6163forward
CNT30513968Zea maysJuglans regia27.2729.4180.83120forward
CNT30710265Zea maysGlycine max50.2348.4679.64221forward
CNT3084561Zea maysVigna radiata38.6428.7279.41170forward
CNT30659481Zea maysTriticum dicoccoides27.0528.1388.24119forward
CNT30133288Zea maysLolium perenne5534.1887.19242forward
CNT30347532Zea maysEragrostis tef53.6445.2189.83236forward
CNT30575700Zea maysOryza barthii4021.0587.5176forward
CNT30585285Zea maysEchinochloa crusgalli59.3235.2791.95261forward
CNT30603839Zea maysOryza punctata56.3615.287.9248forward

Expression of CNT3017824

Peptides detected in this lncRNA

>peptide 1 (72 aa)
LFVVFSTKAVMAPREASVICLRSSTSASMPLSLPLYTSSMSLPTVAASMPGSEVMPSSGLHCFAVLTMELTI*

>peptide 2 (89 aa)
AVCGLLNEGGDGAARSLSDLPQKLDVSQYALVTSPVHIFNVPAHCGGKYAGQRGYAVLGVALLCSADDGAHNLRTTPGVLERLVGRDEL*

Sequence

>CNT3017824
TGCTGTTTGTGGTCTTCTCAACGAAGGCGGTGATGGCGCCGCGCGAAGCCTCAGTGATCTGCCTCAGAAGCTCGACGTCAGCCAGTATGCCCTTGTCACT
TCCCCTGTACACATCTTCAATGTCCCTGCCCACTGTGGCGGCAAGTATGCCGGGCAGCGAGGTTATGCCGTCCTCGGGGTTGCACTGCTTTGCAGTGCTG
ACGATGGAGCTCACAATCTGAGGACCACGCCCGGTGTCCTTGAGAGACTGGTAGGAAGAGATGAGCTCTGACAGCTGCTTGAGCCCCTTGTAGAGGCCGG
CGTTCTCGGCCGGTGGGGTCAGGTAGCTGATGGTGTTCGCGTAGCTCCGGCGCTTGGCCACCGTGGCCTCTGATGGGTTGTTTGCAGCATAGTAGTAGAT
GTTGGGGATGTTGCCAATGAGGCTGTCAGGGAAGCAGGCG