Detailed information on CNT30722532


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB0|TBB3_WHEAT, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673843Triticum speltaSetaria viridis46.6670.5588.16321forward
CNT30522713Triticum speltaSetaria italica51.3195.1582.44353forward
CNT30486254Triticum speltaOlea europaea22.9741.2586.71158forward
CNT30567082Triticum speltaActinidia chinensis21.0832.9585.52145forward
CNT30442409Triticum speltaAegilops tauschii72.3874.33100498forward
CNT3015820Triticum speltaZea mays45.3568.2787.18312forward
CNT30206408Triticum speltaHelianthus annuus19.3340.4385.71133forward
CNT30368820Triticum speltaSorghum bicolor43.1756.3688.55297forward
CNT30150001Triticum speltaBrachypodium distachyon31.8369.384.47219forward
CNT3099512Triticum speltaOryza rufipogon36.3441.8188250forward
CNT30117026Triticum speltaOryza nivara36.0536.983.87248forward

Expression of CNT30722532

SRR9114152: 4.46 RPKM

Peptides detected in this lncRNA

>peptide 1 (58 aa)
GYQAHSYANITVRIKPPSTYKKKTVQKISIRRSSKSIYKCYQPPKDLSAPQAPPNRQQ*

>peptide 2 (62 aa)
MLLSASVDDIDRPVGGMSHTLDFTLLGIHSTKYDEFLFWTFSICSSTSLVLIFPRNMAEAVR*

>peptide 3 (46 aa)
MRSGGLGSLLFLLLVILFLLVGCGILVLLVLSDQIVHVALRLGGRH*

>peptide 4 (42 aa)
MEARERDQVDCEFPEVGVQLTGEAEAASDTAHCCRYKMVQITN

Sequence

>CNT30722532
GGGTATCAAGCCCACAGTTACGCTAATATCACAGTTCGCATAAAACCACCATCAACATACAAAAAAAAAACAGTTCAAAAAATATCGATTCGCCGAAGCA
GCAAAAGCATCTATAAGTGTTACCAACCACCTAAAGATCTATCCGCACCACAAGCACCACCAAATCGACAGCAATAGTAAACACAAGGCATATCTAACAG
ACAGCAGGATGACCATATGAGGTCAGGTGGCTTAGGCAGCCTCCTCTTCCTCCTCCTCGTCATACTCTTCCTCCTCGTCGGCTGTGGCATCCTGGTACTG
CTGGTACTCAGCGACCAGATCGTTCATGTTGCTCTCCGCCTCGGTGGACGACATTGACAGGCCTGTGGGAGGGATGTCACACACGCTTGACTTCACATTG
TTGGGTATCCACTCCACAAAGTATGATGAGTTCTTGTTCTGGACGTTCAGCATCTGCTCGTCAACCTCCTTGGTGCTCATCTTCCCACGGAACATGGCAG
AGGCTGTGAGGTAGCGGCCGTGCCGCGGGTCAGTGGTGCAAAGCCAACCATGAAGAAATGGAGGCGAGGGAACGGGATCAAGTTGACTGCGAGTTTCCGG
AGGTCGGAGTTCAGCTGACCGGGGAAGCGGAGGCAGCAAGTGACACCGCTCATTGTTGCAGATATAAGATGGTTCAGATCACCAACTG