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Detailed information on CNT30486254


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Olea europaeaOryza sativa24.816.5887.3795forward
CNT30674723Olea europaeaSetaria viridis48.32189.19185forward
CNT30522155Olea europaeaSetaria italica45.4319.886.21174forward
CNT30641074Olea europaeaNymphaea colorata44.9146.8784.88172forward
CNT30534291Olea europaeaEucalyptus grandis30.8118.5285.59118forward
CNT30376427Olea europaeaArabidopsis thaliana44.1327.3985.21169forward
CNT30727252Olea europaeaCorchorus capsularis46.4823.7785.39178forward
CNT30381383Olea europaeaManihot esculenta29.56.4386.73113forward
CNT30402401Olea europaeaBeta vulgaris33.6810.8685.27129forward
CNT30629386Olea europaeaVigna unguiculata33.4249.6182.81128forward
CNT30196370Olea europaeaPisum sativum48.319.4184.86185forward
CNT30708222Olea europaeaGlycine max50.6548.1485.57194forward
CNT3092760Olea europaeaSolanum tuberosum40.4722.487.74155forward
CNT30291318Olea europaeaTriticum aestivum42.5648.9587.73163forward
CNT30223001Olea europaeaHordeum vulgare38.3852.8885.03147forward
CNT30390564Olea europaeaTriticum turgidum22.4528.2988.3786forward
CNT30559885Olea europaeaActinidia chinensis46.7434.1684.92179forward
CNT30586804Olea europaeaMusa acuminata22.7211.2789.6687forward
CNT30542792Olea europaeaBrassica napus30.2926.7383.62116forward
CNT30511260Olea europaeaSolanum lycopersicum34.232.5187.02131forward
CNT30553024Olea europaeaOryza glaberrima45.6912.2584175forward
CNT30442409Olea europaeaAegilops tauschii46.2126.4287.57177forward
CNT30253208Olea europaeaAvena sativa46.2114.7387.01177forward
CNT30261872Olea europaeaBrassica rapa45.6919.7783.43175forward
CNT30614070Olea europaeaArabis alpina49.3513.6885.19189forward
CNT305432Olea europaeaZea mays48.0450.1487.5184forward
CNT3041960Olea europaeaChlamydomonas reinhardtii18.5420.8288.7371forward
CNT30608822Olea europaeaGossypium raimondii48.327.6185.95185forward
CNT30209019Olea europaeaHelianthus annuus44.9120.686.63172forward
CNT30627268Olea europaeaDaucus carota48.8315.1186.63187forward
CNT30681848Olea europaeaTriticum urartu48.320.987.03185forward
CNT30722532Olea europaeaTriticum spelta41.2522.9786.71158forward
CNT30341625Olea europaeaEragrostis tef48.318.9785.95185forward
CNT30364844Olea europaeaSorghum bicolor47.2641.5186.74181forward
CNT30595966Olea europaeaOryza meridionalis45.6928.5585.14175forward
CNT30369350Olea europaeaOryza glumipatula49.6127.3487.37190forward
CNT30424412Olea europaeaPapaver somniferum20.16.7890.9177forward
CNT30570854Olea europaeaVitis vinifera36.0368.6685.51138forward
CNT30706519Olea europaeaPrunus avium49.6122.9282.63190forward
CNT3033661Olea europaeaTheobroma cacao47.5287.584.62182forward
CNT3054138Olea europaeaAmborella trichopoda44.1333.3384.02169forward
CNT3024644Olea europaeaPopulus trichocarpa48.04986.41184forward
CNT30322043Olea europaeaAsparagus officinalis45.4320.7984.48174forward
CNT30119164Olea europaeaCitrus clementina41.2533.9183.54158forward
CNT3036150Olea europaeaCucumis melo33.4237.9884.38128forward
CNT30330123Olea europaeaDioscorea rotundata48.318.1789.19185forward
CNT30150001Olea europaeaBrachypodium distachyon26.1131.6586100forward
CNT3099978Olea europaeaOryza rufipogon47.2622.3587.85181forward
CNT30575061Olea europaeaOryza barthii49.6120.987.37190forward
CNT30117026Olea europaeaOryza nivara34.7319.7987.97133forward
CNT30333708Olea europaeaCynara cardunculus45.4321.4887.93174forward
CNT30602702Olea europaeaGaldieria sulphuraria24.0210.2183.792forward
CNT3049477Olea europaeaCucumis sativus24.833.4591.5895forward

Expression of CNT30486254

Peptides detected in this lncRNA

>peptide 1 (39 aa)
FIPHNALPHPHHSLPPPLQWHPGTVDTQQPNHSYCFQLQ*

>peptide 2 (74 aa)
LFLIMLFLTLIIVFLLLYSGILVLLILSNQIIHIAFSFSELHFIHPFPGVPVQEGLASEHGQLGERHTHWTSRC*

Sequence

>CNT30486254
GTTTATTCCTCATAATGCTCTTCCTCACCCTCATCATAGTCTTCCTCCTCCTCTACAGTGGCATCCTGGTACTGTTGATACTCAGCAACCAAATCATTCA
TATTGCTTTCAGCTTCAGTGAACTCCATTTCATCCATCCCTTCCCCGGTGTACCAGTGCAAGAAGGCCTTGCGTCGGAACATGGCCAATTGGGGGAACGT
CACACACACTGGACTTCACGTTGTTAGGGATCCACTCGACAAAGTATGAGGAGTTCTTGTTCTGGACGTTGAGCATTTGTTCGTCGACCTCTTTGGTGCT
CATTTTTCCTCGGAACATGGCAGAGGCTGTCAGATAGCGTCCATGGCGAGGGTCAGCTGCACACATCATGTTCTTGGCATCCC