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Detailed information on CNT3099512


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 6e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Oryza rufipogonOryza sativa23.2424.2694.24139forward
CNT30522713Oryza rufipogonSetaria italica28.2645.5593.49169forward
CNT30629386Oryza rufipogonVigna unguiculata26.9262.488.2161forward
CNT30390564Oryza rufipogonTriticum turgidum17.7334.8794.34106forward
CNT30542792Oryza rufipogonBrassica napus21.0729.0387.3126forward
CNT30722532Oryza rufipogonTriticum spelta41.8136.3488250forward

Expression of CNT3099512

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLLSASVDAMERPRGGMSHTLDFTLLGIHSTK*

>peptide 2 (37 aa)
RCSKTRDSNGSNQSQYKNPIHSPNICDSIRIQTWSGR*

>peptide 3 (41 aa)
IDAARQETATGAIKASTRIQYTPQTYAIAYESKHGLVGETD*

Sequence

>CNT3099512
ATCGATGCAGCAAGACAAGAGACAGCAACGGGAGCAATCAAAGCCAGTACAAGAATCCAATACACTCCCCAAACATATGCGATAGCATACGAATCCAAAC
ATGGTCTGGTAGGTGAAACGGATTAAAGTGGCAGTAGCATCAGCGGCGCTACGGACCACACAGCATTGTACTACTACTACATTACCCAAAAGCACATAAC
CAATTAAGCATCATCATACCGAAACAATAATAAAGATTGCCCAAACGGTAGGACACAACAGGCGACACTCAAGATGGGATCCCAGGAGAAACTCCGGCGA
GATTACTCGTCTTCGGGGACCTGCTCCTCTTCGTCCTCGTAGTCGCCCTCCTCGTCGGCGGTGGCATCCTGGTACTGCTGGTACTCGGATACAAGGTCGT
TCATGTTGCTCTCGGCCTCGGTGGACGCCATGGAGAGGCCGCGCGGCGGGATGTCGCACACGCTGGACTTCACGTTGTTGGGGATCCACTCGACGAAGTA
GGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTGCCGCGGAACATGGCGGAGGCCGTGAGGTAGCGGCCAT