Detailed information on CNT3015820


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41784|TBB7_MAIZE, E-value = 4e-83

BLAST vs NONCODE:
NONPOPT002096, E-value = 4e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673843Zea maysSetaria viridis95.6296.0493.59437forward
CNT30522713Zea maysSetaria italica76.8194.6184.33351forward
CNT30641074Zea maysNymphaea colorata53.6166.7686.12245forward
CNT30516889Zea maysJuglans regia29.3222.1582.84134forward
CNT30402401Zea maysBeta vulgaris95.6236.7881.01437forward
CNT30629386Zea maysVigna unguiculata31.2955.4387.41143forward
CNT30168132Zea maysPistacia vera30.4233.8284.89139forward
CNT30542792Zea maysBrassica napus86.2190.7883.25394forward
CNT30722532Zea maysTriticum spelta68.2745.3587.18312forward
CNT30368415Zea maysSorghum bicolor95.6242.4793.14437forward
CNT30330123Zea maysDioscorea rotundata66.0829.6784.11302forward
CNT30150328Zea maysBrachypodium distachyon14.6621.6892.5467forward

Expression of CNT3015820

Peptides detected in this lncRNA

>peptide 1 (64 aa)
SIPSPVYQCKKAFLLNMAVNCSLTRRNISWMEVELPTNVEDIFRPIGGMSHTLDFTLLGIHSTK*

>peptide 2 (51 aa)
MWRTSSGQLVECHTHSTSRCWGSTPRSRKSSCSARSASVHPLPWCSSSHGT*

>peptide 3 (33 aa)
IHTLACVPVQESLPPEHGRELLADAAEHLLDGG*

>peptide 4 (32 aa)
MTRVSGANPTMKKCRRGKGIRFTASFRRSEFS*

Sequence

>CNT3015820
ATCCATACCCTCGCCTGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATGGCCGTGAACTGCTCGCTGACGCGGCGGAACATCTCTTGGATGGAGGTT
GAGTTGCCAACGAATGTGGAGGACATCTTCAGGCCAATTGGTGGAATGTCACACACACTCGACTTCACGTTGTTGGGGATCCACTCCACGAAGTAGGAAG
AGTTCTTGTTCTGCACGTTCAGCATCTGTTCATCCACTTCCTTGGTGCTCATCTTCCCACGGAACATAGCAGATGCCGTGAGGTAGCGGCCATGACGAGG
GTCAGTGGAGCAAATCCAACCATGAAGAAGTGCAGACGTGGGAAGGGGATCAGGTTCACTGCAAGCTTCCGGAGGTCAGAATTCAGCTGACCAGGGAAGC
GAAGGCAGCACGTAACACCACTCATGGTTGCAGAGATAAGGTGGTTGAGATCACCAA