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Detailed information on CNT30442409


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB0|TBB3_WHEAT, E-value = 1e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674723Aegilops tauschiiSetaria viridis54.6341.5486.89366forward
CNT30522155Aegilops tauschiiSetaria italica47.7636.4185.31320forward
CNT30641079Aegilops tauschiiNymphaea colorata35.2231.7687.29236forward
CNT30534291Aegilops tauschiiEucalyptus grandis28.6630.1481.77192forward
CNT30516889Aegilops tauschiiJuglans regia29.432.5682.74197forward
CNT30377262Aegilops tauschiiArabidopsis thaliana42.2448.4688.69283forward
CNT30728062Aegilops tauschiiCorchorus capsularis44.1833.9883.45296forward
CNT30402401Aegilops tauschiiBeta vulgaris22.9912.9686.36154forward
CNT30629386Aegilops tauschiiVigna unguiculata24.9364.7385.03167forward
CNT30196370Aegilops tauschiiPisum sativum29.8520.9986.5200forward
CNT30486254Aegilops tauschiiOlea europaea26.4246.2187.57177forward
CNT30708222Aegilops tauschiiGlycine max24.0339.9587.58161forward
CNT30291318Aegilops tauschiiTriticum aestivum38.5177.4886.82258forward
CNT30223001Aegilops tauschiiHordeum vulgare22.6954.6886.84152forward
CNT30390564Aegilops tauschiiTriticum turgidum15.0733.2291.09101forward
CNT30562825Aegilops tauschiiActinidia chinensis41.7950.7282.5280forward
CNT30586804Aegilops tauschiiMusa acuminata30.4526.4284.31204forward
CNT30542792Aegilops tauschiiBrassica napus21.9433.8788.44147forward
CNT30511260Aegilops tauschiiSolanum lycopersicum19.432.2683.85130forward
CNT30553024Aegilops tauschiiOryza glaberrima5023.4682.99335forward
CNT30252641Aegilops tauschiiAvena sativa54.1844.6594.49363forward
CNT30261872Aegilops tauschiiBrassica rapa50.338.0880.42337forward
CNT30614070Aegilops tauschiiArabis alpina25.3712.388.82170forward
CNT3015387Aegilops tauschiiZea mays24.7810.2689.16166forward
CNT30608822Aegilops tauschiiGossypium raimondii41.4941.4984.53278forward
CNT30209019Aegilops tauschiiHelianthus annuus44.1835.4581.76296forward
CNT30627268Aegilops tauschiiDaucus carota35.6719.3184.52239forward
CNT30681848Aegilops tauschiiTriticum urartu54.1841.0285.67363forward
CNT30722532Aegilops tauschiiTriticum spelta74.3372.38100498forward
CNT30341625Aegilops tauschiiEragrostis tef54.1837.2389.53363forward
CNT30364844Aegilops tauschiiSorghum bicolor45.2269.588.45303forward
CNT30595966Aegilops tauschiiOryza meridionalis30.633.4486.34205forward
CNT30369350Aegilops tauschiiOryza glumipatula71.9469.3582.16482forward
CNT30433323Aegilops tauschiiPapaver somniferum47.1628.9681.65316forward
CNT30570854Aegilops tauschiiVitis vinifera22.5475.1284.77151forward
CNT30706519Aegilops tauschiiPrunus avium49.139.6983.28329forward
CNT3033661Aegilops tauschiiTheobroma cacao28.6692.3186.46192forward
CNT3057373Aegilops tauschiiAmborella trichopoda34.6342.5781.47232forward
CNT3024644Aegilops tauschiiPopulus trichocarpa41.4913.5984.17278forward
CNT30328090Aegilops tauschiiAsparagus officinalis4079.2985.82268forward
CNT30330123Aegilops tauschiiDioscorea rotundata31.0420.4386.06208forward
CNT30150001Aegilops tauschiiBrachypodium distachyon32.6969.384.47219forward
CNT3099978Aegilops tauschiiOryza rufipogon45.5237.6587.54305forward
CNT30575061Aegilops tauschiiOryza barthii49.5536.5285.54332forward
CNT30117026Aegilops tauschiiOryza nivara37.0136.983.87248forward
CNT30333708Aegilops tauschiiCynara cardunculus66.1254.6982.39443forward

Expression of CNT30442409

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLLSASVDDIDRPVGGMSHTLDFTLLGIHSTKYDEFLFWTFSICSSTSLVLIFPRNMAEAVR*

>peptide 2 (46 aa)
RIKPPSTYKKKTVQKISIRRSSKSIYKCYQPPKDLSAPQAPPNRQQ*

>peptide 3 (46 aa)
MRSGGLGSLLFLLLVILFLLVGCGILVLLVLSDQIVHVALRLGGRH*

Sequence

>CNT30442409
TCGCATAAAACCACCATCAACATACAAAAAAAAAACAGTTCAAAAAATATCGATTCGCCGAAGCAGCAAAAGCATCTATAAGTGTTACCAACCACCTAAA
GATCTATCCGCACCACAAGCACCACCAAATCGACAGCAATAGTAAACACAAGGCATATCTAACAGACAGCAGGATGACCATATGAGGTCAGGTGGCTTAG
GCAGCCTCCTCTTCCTCCTCCTCGTCATACTCTTCCTCCTCGTCGGCTGTGGCATCCTGGTACTGCTGGTACTCAGCGACCAGATCGTTCATGTTGCTCT
CCGCCTCGGTGGACGACATTGACAGGCCTGTGGGAGGGATGTCACACACGCTTGACTTCACATTGTTGGGTATCCACTCCACAAAGTATGATGAGTTCTT
GTTCTGGACGTTCAGCATCTGCTCGTCAACCTCCTTGGTGCTCATCTTCCCACGGAACATGGCAGAGGCTGTGAGGTAGCGGCCGTGCCGCGGGTCAGCA
GCACACATCATGTTCTTTGAGTCCCACATCTGCTGGGTCAACTCAGGAACAGTGAGGGCACGGTACTGCTGAGAACCCCTTGAGGTCAGTGGTGCAAAGC
CAACCATGAAGAAATGGAGGCGAGGGAACGGGATCAAGTTGACTGCGAGTTTCCGGAGGTCGGAGTTCAG