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Detailed information on CNT30522713


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43697|TBB5_MAIZE, E-value = 8e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675279Setaria italicaSetaria viridis94.6148.08100351forward
CNT30516889Setaria italicaJuglans regia48.7929.9282.87181forward
CNT30381383Setaria italicaManihot esculenta102.9621.7480.89382forward
CNT30402401Setaria italicaBeta vulgaris84.6426.4381.85314forward
CNT30196370Setaria italicaPisum sativum50.1319.5284.95186forward
CNT30168132Setaria italicaPistacia vera31.2728.2283.62116forward
CNT30562824Setaria italicaActinidia chinensis97.0464.7586.11360forward
CNT30542792Setaria italicaBrassica napus88.6875.8181.76329forward
CNT30511058Setaria italicaSolanum lycopersicum22.6435.1585.7184forward
CNT30614070Setaria italicaArabis alpina37.29.9992.03138forward
CNT3015820Setaria italicaZea mays94.6176.8184.33351forward
CNT30608822Setaria italicaGossypium raimondii36.9320.4586.13137forward
CNT30681999Setaria italicaTriticum urartu85.1899.3792.09316forward
CNT30722532Setaria italicaTriticum spelta95.1551.3182.44353forward
CNT30368820Setaria italicaSorghum bicolor82.2157.8784.26305forward
CNT30422340Setaria italicaPapaver somniferum46.0920.1983.04171forward
CNT3057379Setaria italicaAmborella trichopoda28.8438.3585.98107forward
CNT30328043Setaria italicaAsparagus officinalis47.4467.9586.36176forward
CNT30149545Setaria italicaBrachypodium distachyon25.8828.5792.7196forward
CNT3099512Setaria italicaOryza rufipogon45.5528.2693.49169forward
CNT30117026Setaria italicaOryza nivara51.7528.5792.19192forward

Expression of CNT30522713

Peptides detected in this lncRNA

>peptide 1 (32 aa)
VELPMKVDAMDRPLGGMSHTLDFTLLGIHSTK*

>peptide 2 (44 aa)
MAEAVRARYCWEPREVSGAKPTMKKWRRGKGIRFTASFRRSEFS*

Sequence

>CNT30522713
GGTTGAGTTGCCAATGAAGGTGGACGCCATGGACAGGCCCCTTGGCGGGATGTCACACACACTGGACTTCACGTTGTTGGGGATCCACTCCACGAAGTAG
GACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTCCCACGGAACATGGCAGAGGCAGTGAGGGCACGGTACTGCT
GGGAGCCACGGGAGGTCAGTGGGGCGAAGCCGACCATGAAGAAGTGGAGACGGGGGAAGGGGATCAGGTTCACTGCCAGCTTCCGGAGATCCGAGTTCAG
CTGACCAGGGAACCTAAGGCAGCAGGTGACTCCACTCATGGTAGCAGAGATCAAATGGTTCAAATCCCCAA