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Detailed information on CNT30150001


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Brachypodium distachyonOryza sativa24.0513.2692.1176forward
CNT30678154Brachypodium distachyonSetaria viridis36.3918.8289.57115forward
CNT30522155Brachypodium distachyonSetaria italica23.18.390.4173forward
CNT30641079Brachypodium distachyonNymphaea colorata24.0510.2390.7976forward
CNT30534291Brachypodium distachyonEucalyptus grandis36.3918.0584.35115forward
CNT30728063Brachypodium distachyonCorchorus capsularis31.9611.6488.12101forward
CNT3071804Brachypodium distachyonQuercus suber31.3315.9286.8799forward
CNT30381383Brachypodium distachyonManihot esculenta25.324.5588.7580forward
CNT30196370Brachypodium distachyonPisum sativum24.378.0885.7177forward
CNT30486254Brachypodium distachyonOlea europaea31.6526.1186100forward
CNT30708222Brachypodium distachyonGlycine max33.2326.0587.62105forward
CNT3092760Brachypodium distachyonSolanum tuberosum32.5914.8886.41103forward
CNT30390564Brachypodium distachyonTriticum turgidum25.9526.9789.0282forward
CNT30559885Brachypodium distachyonActinidia chinensis31.6519.0886100forward
CNT30586804Brachypodium distachyonMusa acuminata23.429.5990.5474forward
CNT30511260Brachypodium distachyonSolanum lycopersicum35.4427.7983.93112forward
CNT30553024Brachypodium distachyonOryza glaberrima24.055.3292.1176forward
CNT30442409Brachypodium distachyonAegilops tauschii69.332.6984.47219forward
CNT30253208Brachypodium distachyonAvena sativa73.7319.3886.27233forward
CNT30261872Brachypodium distachyonBrassica rapa32.9111.7585.58104forward
CNT30614348Brachypodium distachyonArabis alpina257.4987.3479forward
CNT3011897Brachypodium distachyonZea mays28.1626.7391.0189forward
CNT3041960Brachypodium distachyonChlamydomonas reinhardtii23.4221.790.5474forward
CNT30627268Brachypodium distachyonDaucus carota25.956.6289.0282forward
CNT30722532Brachypodium distachyonTriticum spelta69.331.8384.47219forward
CNT30341625Brachypodium distachyonEragrostis tef21.26.8794.0367forward
CNT30368415Brachypodium distachyonSorghum bicolor35.7610.9888.5113forward
CNT30595966Brachypodium distachyonOryza meridionalis24.0512.492.1176forward
CNT30370171Brachypodium distachyonOryza glumipatula24.058.9692.1176forward
CNT30433292Brachypodium distachyonPapaver somniferum29.118.7883.792forward
CNT3024644Brachypodium distachyonPopulus trichocarpa24.373.7789.6177forward
CNT30119164Brachypodium distachyonCitrus clementina32.5922.188.35103forward
CNT3036150Brachypodium distachyonCucumis melo28.1626.4188.7689forward
CNT30332119Brachypodium distachyonDioscorea rotundata23.4211.6590.5474forward
CNT3099978Brachypodium distachyonOryza rufipogon24.059.3889.4776forward
CNT30575530Brachypodium distachyonOryza barthii24.058.4292.1176forward
CNT30333708Brachypodium distachyonCynara cardunculus27.2210.6288.3786forward
CNT3049477Brachypodium distachyonCucumis sativus27.2230.2887.2186forward

Expression of CNT30150001

Peptides detected in this lncRNA

>peptide 1 (63 aa)
ELAKYNSRFTNIKSTVTLAPQFPASKHHQPPKDLSAPQAPPNTVIVNTRHIYDSKTMEQGQVA*

Sequence

>CNT30150001
GAACTAGCGAAATATAATTCCAGATTTACTAATATTAAGTCCACAGTTACGCTAGCACCACAATTTCCAGCTTCAAAGCACCATCAACCACCTAAAGATC
TATCCGCACCACAAGCACCACCAAATACAGTAATAGTAAACACGAGACACATCTACGATAGCAAGACAATGGAACAAGGCCAGGTAGCTTAGGCAGCAAC
CTCCTCTTCCTCCTCATCATACTCTTCCTCATCTTCAGCTGTGGCGTCCTGGTACTGCTGATACTCAGCAACCAGGTCGTTCATGTTGCTCTCAGCCTCA
GTGAACTCCATCTCGT