Detailed information on CNT30673843


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 1e-78

BLAST vs NONCODE:
NONPOPT002096, E-value = 6e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402401Setaria viridisBeta vulgaris96.2636.8782.42438forward
CNT30542792Setaria viridisBrassica napus90.1194.4783.41410forward
CNT3015820Setaria viridisZea mays96.0495.6293.59437forward
CNT30722532Setaria viridisTriticum spelta70.5546.6688.16321forward
CNT30368415Setaria viridisSorghum bicolor91.6540.5291.85417forward
CNT3057379Setaria viridisAmborella trichopoda32.5353.0583.78148forward
CNT30150328Setaria viridisBrachypodium distachyon14.7321.6892.5467forward

Expression of CNT30673843

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARVSGANPTMKKCRRGKGIRFTASFRRSEFS*

>peptide 2 (93 aa)
LLVLGHQCKKAFLLNMAVNCSLTRRNISWMEVELPMNVDAIFRPLGGMSHTLDFTLLGIHSTKYDEFLFCTFSICSSTSLVLIFPRNMADAVR*

>peptide 3 (65 aa)
TAGTRPPVQEGLPPEHGCELLAHAAEHLLDGGRVADERGRHLQALGRDVTHTRLHVVGDPLNKVR*

Sequence

>CNT30673843
ACTGCTGGTACTCGGCCACCAGTGCAAGAAGGCCTTCCTCCTGAACATGGCTGTGAACTGCTCGCTCACGCGGCGGAACATCTCCTGGATGGAGGTCGAG
TTGCCGATGAACGTGGACGCCATCTTCAGGCCCTTGGGCGGGATGTCACACACACTCGACTTCACGTTGTTGGGGATCCACTCAACAAAGTACGATGAGT
TCTTGTTCTGCACGTTCAGCATCTGCTCATCCACTTCCTTGGTGCTCATCTTCCCACGGAACATGGCGGATGCAGTGAGGTAGCGGCCATGGCGAGGGTC
AGTGGAGCAAATCCAACCATGAAGAAGTGTAGACGTGGGAAGGGGATCAGGTTCACTGCAAGCTTCCGGAGGTCAGAATTCAGCTGACCAGGGAAGCGCA
GGCAGCATGTGACACCACTCATGGTTGCAGAGATAAGGTGGTTGAGATCACCAAC