Detailed information on CNT30116501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221493Oryza nivaraHordeum vulgare29.5848.7985.95121forward
CNT3085565Oryza nivaraVigna radiata15.422.7492.0663forward
CNT30464311Oryza nivaraSaccharum spontaneum46.2137.5786.24189forward
CNT30135672Oryza nivaraLolium perenne18.3432.199275forward
CNT303678Oryza nivaraZea mays20.785.9788.2485forward
CNT30649370Oryza nivaraRosa chinensis20.7810.8483.5385forward
CNT30365871Oryza nivaraSorghum bicolor27.3833.9487.5112forward
CNT30596150Oryza nivaraOryza meridionalis32.2755.9396.97132forward
CNT30370131Oryza nivaraOryza glumipatula28.8556.1999.15118forward
CNT30704355Oryza nivaraPrunus avium21.767.4585.3989forward
CNT3035937Oryza nivaraCucumis melo20.296.2885.5483forward
CNT30585090Oryza nivaraEchinochloa crusgalli25.926.291.51106forward
CNT30498134Oryza nivaraDigitaria exilis34.9636.2984.62143forward

Expression of CNT30116501

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MHSPSDLHCIPRYMKSAKRLRLSLNAAYRRSSSPTAL*

>peptide 2 (42 aa)
PVYVTPFVLAFVRVVILGVDSTIVDDEIKCIVHQTSIASLVI*

Sequence

>CNT30116501
CCTGTTTACGTCACACCGTTCGTCCTTGCCTTTGTAAGGGTAGTCATCCTCGGTGTCGATTCCACCATTGTTGATGATGAAATCAAATGCATAGTCCATC
AGACCTCCATTGCATCCCTCGTTATATGAAGTCGGCGAAGCGGTTGAGGTTGTCCCTGAACGCCGCGTACCGCCGCTCCTCCTCGCCGACGGCGTTGTAG
TTCTTGCCGTGCTCGGCCTTCCACTCCGCGTACAGCCGCCGCGCCTCCTCCTCGCTCCTCTCCCCGTACGACACGATCGACATGTCCGCCGCTGCCAGCG
ACAGCAGCAGCAGCAGCGCGGCCGCCGCGAGAGCCATGGAAATCCTCATCTTGGCGAGCTAGGAGAAGACGACCAAGAAGAGGAGGAGGAGAGGTAGAAG
AGGAGTAGA