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Detailed information on CNT30596150


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042656Oryza meridionalisPrunus dulcis55.5119.6183.97131forward
CNT3098506Oryza meridionalisSolanum tuberosum34.323.985.1981forward
CNT30586560Oryza meridionalisMusa acuminata74.5812.2382.95176forward
CNT3085565Oryza meridionalisVigna radiata26.6922.7488.8963forward
CNT30454273Oryza meridionalisSaccharum spontaneum80.0887.189.42189forward
CNT30624236Oryza meridionalisDaucus carota32.632.8284.4277forward
CNT30370131Oryza meridionalisOryza glumipatula88.9810098.1210forward
CNT30704355Oryza meridionalisPrunus avium55.5110.9783.97131forward
CNT3035937Oryza meridionalisCucumis melo83.4714.9181.22197forward
CNT30585090Oryza meridionalisEchinochloa crusgalli88.1412.1691.83208forward
CNT30116501Oryza meridionalisOryza nivara55.9332.2796.97132forward

Expression of CNT30596150

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHSPSDLHCIPRYMKCHSQLAPAQTKRSGRQ*

>peptide 2 (42 aa)
PVYVTPFVLAFVRVVVLSVDSTIVNNEIKCIVHQTSIASLVI*

Sequence

>CNT30596150
CCTGTTTACGTCACACCGTTCGTCCTTGCCTTTGTAAGGGTAGTCGTCCTCAGTGTCGATTCCACCATTGTTAATAATGAAATCAAATGCATAGTCCATC
AGACCTCCATTGCATCCCTCGTTATATGAAGTGTCACAGTCAACTAGCTCCTGCTCAGACAAAGAGATCAGGTCGCCAGTAACAATCTGGTTGATGCCTT
CTACAGCTGCTATTGCTGAGAAAGCCCAGCAACTTC