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Detailed information on CNT30454273


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042656Saccharum spontaneumPrunus dulcis48.8515.8785.85106forward
CNT30586560Saccharum spontaneumMusa acuminata68.210.2883.78148forward
CNT3085565Saccharum spontaneumVigna radiata23.0418.059450forward
CNT30649370Saccharum spontaneumRosa chinensis38.2510.5985.5483forward
CNT30624236Saccharum spontaneumDaucus carota36.412.8984.8179forward
CNT30596150Saccharum spontaneumOryza meridionalis87.180.0889.42189forward
CNT30370131Saccharum spontaneumOryza glumipatula87.19089.95189forward
CNT30704355Saccharum spontaneumPrunus avium48.858.8885.85106forward
CNT3035937Saccharum spontaneumCucumis melo75.5812.4181.71164forward

Expression of CNT30454273

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LVGITPAIRALVRVIRLRVDSTIVDDELKRIVHQTSIAPLVV*

Sequence

>CNT30454273
CTTGTTGGCATCACACCGGCCATCCGTGCCCTTGTAAGGGTAATCAGACTCCGTGTCGATTCCACCATTGTTGATGATGAACTCAAACGCATAGTCCATC
AGACCTCCATTGCACCCCTGGTTGTATGAAGTGTCACAATCAACGAGCTCCTGCTCAGACAAGGAGATCAAGTCGCCCGTAACAATCTGGTTGATGCCTT
GTACTGCTGCTATTGTT