Detailed information on CNT30671488


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RWW1|TMN10_ARATH, E-value = 4e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549621Setaria viridisIpomoea triloba22.0323.7782.7687forward
CNT30378477Setaria viridisArabidopsis thaliana69.3745.7483.58274forward
CNT30490055Setaria viridisOlea europaea21.2719.5886.984forward
CNT3044799Setaria viridisPrunus dulcis28.6120.5583.19113forward
CNT30160060Setaria viridisPistacia vera72.6627.783.97287forward
CNT30564723Setaria viridisActinidia chinensis75.718.3780.94299forward
CNT30366883Setaria viridisSorghum bicolor38.2326.1786.09151forward
CNT30704258Setaria viridisPrunus avium22.0314.588.5187forward
CNT30150459Setaria viridisBrachypodium distachyon33.4220.5386.36132forward
CNT30103143Setaria viridisOryza rufipogon78.2323.6686.08309forward
CNT3063675Setaria viridisSelaginella moellendorffii25.8230.4590.2102forward

Expression of CNT30671488

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEVRMKKSSMKTAPNGRMPPIRMVKIGFMY*

Sequence

>CNT30671488
ACCCGAAGTACAAGATGCCAGACACCAGCTTTGTAATCTGCAGCTTTGTGGAGAAGTAGAAAGCCGCGTACAGGAAGAGATATAAAGCGGAGGATCCTGA
GGTGAGGTAAGACCTCCACCACCACATGTAGTCCTCACTGCAGAGCTGGAAATAGCAGAGCACGATTGTGATCTCGGCGCAGGTGATGATGAGGATAACA
AATACAAGGAAGAGGAAGCCAAAGATGTAGTAGAACTGGTGCAGCCAGATGGAGGTGAGGATGAAAAAGAGTTCAATGAAAACTGCTCCAAATGGGAGAA
TGCCACCGATCAGAATGGTGAAGATTGGATTCATGTACTGAGATGCCAAACCAGAGGAGGACCAAGGCAAACATTGTGGTGAAAGGAACAGCACC