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Detailed information on CNT30490055


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671488Olea europaeaSetaria viridis19.5821.2786.984forward
CNT30378260Olea europaeaArabidopsis thaliana41.2638.1580.79177forward
CNT30406390Olea europaeaBeta vulgaris34.0334.7687.67146forward
CNT3044799Olea europaeaPrunus dulcis29.8423.2785.94128forward
CNT30160060Olea europaeaPistacia vera62.725.9780.67269forward
CNT30564723Olea europaeaActinidia chinensis60.6115.9784.23260forward
CNT30469220Olea europaeaSaccharum spontaneum40.5611.8482.18174forward
CNT30366513Olea europaeaSorghum bicolor25.6419.6884.55110forward
CNT30704258Olea europaeaPrunus avium30.772282.58132forward
CNT30150459Olea europaeaBrachypodium distachyon40.5627.0682.18174forward
CNT30102928Olea europaeaOryza rufipogon65.0329.6278.85279forward
CNT3063675Olea europaeaSelaginella moellendorffii24.2431.0484.62104forward

Expression of CNT30490055

Peptides detected in this lncRNA

>peptide 1 (38 aa)
LHLTSIDLHRGIDLPNKPETSTEANGSRQHKEEVKNRV*

>peptide 2 (44 aa)
MEVNMKNNSMKTAPNGRMPPISIENIGFMYHVCSGICLGILFVFT

>peptide 3 (75 aa)
SSYINRSSQRNRSSEQTRNKHRSQWFPSTQRRSKKQSIRKGTKPRNQQSGRPSTTNDNLHCTTESSREQLQSLHM*

Sequence

>CNT30490055
CTTCATCTTACATCAATCGATCTTCACAGAGGAATAGATCTTCCGAACAAACCAGAAACAAGCACAGAAGCCAATGGTTCCCGTCAACACAAAGAAGAAG
TAAAAAACAGAGTATAAGAAAAGGTACAAAGCCGAGGAACCAGCAGTCAGGTAGGCCCTCCACCACCAATGATAATCTTCACTGCACAACTGAAAGTAGC
AGAGAACAATTGCAATCTCTGCACATGTGATTATTAAAATCACCAAGACTATGAAGAGGAAGCCAAAGATGTAATAGAACTGGTTCAGCCAGATGGAAGT
CAATATGAAGAATAATTCAATGAAAACAGCCCCAAACGGAAGGATGCCTCCAATAAGTATAGAGAATATAGGTTTCATGTACCACGTCTGTTCGGGTATC
TGCCTTGGGATCTTGTTTGTTTTCACTGG