Detailed information on CNT30159989


BLAST search results

BLAST vs Swiss-Prot:
sp|F4KIB2|TMN8_ARATH, E-value = 2e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30704258Pistacia veraPrunus avium17.1936.3378.9218forward

Expression of CNT30159989

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPNHKNTRANMVPNGTAPEDCSPHIKAFRTKKMAKQVAGNMKAVFKVIFFHSVPLNIL*

>peptide 2 (52 aa)
MGFYDSKLNPNSLWNFEGTPNIHWEIICASFCRNMPATIFSVAATGESINQS*

>peptide 3 (30 aa)
VYNKFGFLRLFFFFFFFFFFFYYHFFFFFL*

>peptide 4 (31 aa)
MITPTRGNPHCRAGAQVTMRMAKTMKKKPNM*

>peptide 5 (36 aa)
FIINLDFYGFFFFFFFFFFFFIIIFFFFFCNTLKKL*

>peptide 6 (52 aa)
MKKSSMKMAPNGRMPPMRIEKIGFMYQGCSGICLGILLVFTGSSNAGFLKPT*

Sequence

>CNT30159989
GTTTATAATAAATTTGGATTTTTACGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATCATTTTTTTTTTTTTTTTTTGTAATACATTA
AAAAAATTATAAAAACTTTGGGCCCTATTTTTGGGGGCCCTAGGCAGGTGCCTGCCTGCAGACAACATTTGTTAAAGAGACAGGGTAAGTAATTTCAATA
CAAGAATTCCTTTTTCTCCTTAATAGAATCCTCTTAACAAGTCTCATACAAAACGGTAAAGAAAAGAACAATTAACAGGAAAAAAAAAAAGAACTGGAAC
TGCCATTGAACCCTGTGTCAAGAAGAAGAAGAAGAAGACGACTAATAACAATCTCTATGGGGTTTTATGATTCAAAACTGAATCCAAATTCACTCTGGAA
TTTTGAGGGCACCCCAAATATTCACTGGGAAATAATTTGTGCTTCATTTTGTAGAAATATGCCAGCTACTATTTTTTCAGTCGCAGCAACTGGTGAATCA
ATCAATCAATCTTAACTGACGAGTAGATCAGCCGCGTAGAAACCGATCGTACCGGTAAGCAAGAAGAAGGCGTAGGAGACGATCAGCATATAACCGAAGT
ACAAGATCCCGGAAATTGGCTTGGTGATATCGAGCTTCGCGAAGAAGTAGAAAGCTGCATAGAGGAAGAGATAGAATGCTGAAGAACCTGAAGTGAGGTA
TGATCACCCCCACCAGAGGTAATCCTCACTGCAGAGCTGGGGCACAGGTGACAATGAGAATGGCAAAGACGATGAAGAAGAAACCGAATATGTAGTAGAA
CTGATGCAGCCATATTGAGGTGAGAATGAAAAAGAGCTCAATGAAGATGGCTCCAAACGGAAGAATGCCTCCGATGAGGATAGAGAAGATCGGGTTCATG
TACCAGGGCTGCTCTGGGATCTGCCTTGGGATCTTGTTAGTTTTCACAGGATCCTCCAATGCTGGCTTCCTAAAGCCAACATAACTACCCACAAAGACAA
GTGGGACTGAGATGCCGAACCATAAAAATACAAGAGCAAACATGGTTCCAAATGGCACTGCACCAGAGGATTGCTCGCCCCATATTAAAGCATTCAGGAC
AAAGAAAATGGCAAAGCAAGTTGCAGGGAACATGAAAGCTGTTTTCAAAGTGATTTTCTTCCATTCTGTTCCCTTGAACATCTTATAAAGACGAGCAGAA
GCATATCCAGCAAATAAACCCATAAAGATCCAAAGCAGGAGCATGACTGTCATCAACCCACCTCTGTT