CANTATAdb - search

Detailed information on CNT30672118

BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 4e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694852	Setaria viridis	Oryza sativa	27.35	40.26	82.81	221	forward
CNT30520218	Setaria viridis	Setaria italica	83.04	74.39	99.55	671	forward
CNT30452183	Setaria viridis	Saccharum spontaneum	45.17	35.54	91.23	365	forward
CNT30143000	Setaria viridis	Lolium perenne	33.17	27.69	84.7	268	forward
CNT3013388	Setaria viridis	Zea mays	44.93	46.36	88.43	363	forward
CNT30351498	Setaria viridis	Eragrostis tef	45.17	83.72	88.49	365	forward
CNT30362762	Setaria viridis	Sorghum bicolor	47.77	36.11	88.86	386	forward
CNT30102775	Setaria viridis	Oryza rufipogon	35.4	32.1	86.01	286	forward
CNT30576925	Setaria viridis	Oryza barthii	38.37	34.64	85.16	310	forward
CNT30581406	Setaria viridis	Echinochloa crusgalli	58.17	99.58	92.98	470	forward
CNT30496079	Setaria viridis	Digitaria exilis	45.17	41.15	91.23	365	forward
CNT30116193	Setaria viridis	Oryza nivara	29.83	20.97	85.48	241	forward
CNT30593715	Setaria viridis	Eragrostis curvula	28.09	25.56	87.22	227	forward

Expression of CNT30672118

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MEGRSHSIVVSCHTIGIPTIGGGVAHGWGRVWHRDADIDSGYLLNWVNIWLPDSRWAPVAVEAMTNRPVIRVRGGGGV*

>peptide 2 (36 aa)
MLPFSSRSWPSPALRAASGDPPVETQLPVYGPQHTL*

>peptide 3 (44 aa)
SATFFFLTEPTGSKPDGRQEPFHCCKLPYHWHTHHRGWGSSWVG*

>peptide 4 (32 aa)
MMRGKGRRWRMRCGRESGQMWWELGKKTRTRC*

Sequence

>CNT30672118
TCAGCGACTTTTTTTTTCCTGACTGAACCTACCGGTAGTAAGCCTGATGGAAGGCAGGAGCCATTCCATTGTTGTAAGCTGCCATACCATTGGCATACCC
ACCATAGGGGGTGGGGTAGCTCATGGGTGGGGTAGAGTATGGCATCGCGATGCCGACATTGACAGTGGCTACCTCCTCAACTGGGTAAACATATGGCTCC
CTGATAGCCGGTGGGCTCCGGTTGCAGTAGAGGCCATGACCAACCGCCCTGTCATAAGGGTAAGGGGAGGCGGTGGCGTATGATGCGTGGGAAGGGGAGG
CGGTGGCGTATGAGGTGTGGGAGGGAGAGCGGGCAAATGTGGTGGGAGTTGGGAAAGAAGACACGGACGCGTTGTTAGTTCGACCTGCCTTGGCAGGAGG
CATTGGGCCTCCATTGCTTGCACGGATACGCTTGGTTGCAGGGCCACTGCTGCCGCCACTGGAAGCACTTGATGCTGCCTTTTTCTTCTCGGTCTTGGCC
TTCTCCAGCTCTTCGAGCTGCTTCCGGAGATCCTCCAGTGGAAACTCAGCTTCCAGTTTACGGTCCTCAACACACTTTATAACAGCTCGCAGTGCCGACT
GCTCTTTCTTGTTCACATTGCTCTACAAGATAAATAACATCAGACACCATTAGGTTTCATATAACAAAGAGAGGCGCAATAGAATCCAATTAACAGGCAA
GGTGATAAGAACTGAAATCAGAAGTAACATGTGGATGACGGATAGCACTATGCACATGTGAGAACTGTTAACAAGTTACAGTTCAAAAATTGACATCAGA
CATACCCC