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Detailed information on CNT30593715


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 5e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694852Eragrostis curvulaOryza sativa23.3137.786.47207forward
CNT30672118Eragrostis curvulaSetaria viridis25.5628.0987.22227forward
CNT30520218Eragrostis curvulaSetaria italica38.2937.6986.47340forward
CNT30452183Eragrostis curvulaSaccharum spontaneum75.965.6385.61674forward
CNT30143000Eragrostis curvulaLolium perenne30.7428.282.78273forward
CNT3013388Eragrostis curvulaZea mays72.0781.7481.72640forward
CNT30350515Eragrostis curvulaEragrostis tef75.7972.4492.57673reverse complement
CNT30362478Eragrostis curvulaSorghum bicolor75.977.4785.31674forward
CNT30102775Eragrostis curvulaOryza rufipogon20.8320.7684.86185forward
CNT30576925Eragrostis curvulaOryza barthii20.8320.6784.86185forward
CNT30580944Eragrostis curvulaEchinochloa crusgalli74.4464.8783.66661forward
CNT30496504Eragrostis curvulaDigitaria exilis50.4545.9584.15448forward

Expression of CNT30593715

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRDETITNAKRLVVVVRTYEMIFPTYRCSQSLQNRATARF*

>peptide 2 (40 aa)
MGGEGYGMAMPTFATSLTGYTYGSLIACGLWYRPCPAVLS*

>peptide 3 (41 aa)
MTYEMGRLWRTMRGKGRLWRMMRGKGRLWRMMRGKESGQTW*

>peptide 4 (40 aa)
THQHSTTKLKVHLINSVVHPVLRITCLSFWIFLIVLNRIT*

Sequence

>CNT30593715
CACTCATCAACACAGCACAACTAAACTAAAAGTACATTTAATTAATTCCGTGGTACATCCAGTACTTAGGATTACATGCTTATCTTTTTGGATTTTTCTC
ATAGTTCTGAATAGAATTACATAAGGTGATAGGGTTCACAGATAGAATACATAATTTACATGCAGATTCCTTAGCAGTAAAAAAGTAGTGCTCTAACATG
AGAGATGAGACGATAACTAACGCAAAGCGTTTAGTAGTAGTGGTAAGAACATATGAGATGATATTCCCAACCTACCGTTGTAGTCAGTCACTACAAAATA
GGGCCACTGCGCGATTTTGAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGACGCTTTCTCAGACTGAACCTACCGGTAGTAAGCTTGGT
GGAAGGCAGGAGCCATTCCGTTGTTGTAAGCTCCCATCCCATTGCCATAACCACCATAGGGGGTAGGGTAGCTCATGGGTGGGGAAGGGTATGGCATGGC
AATGCCGACGTTTGCTACCTCCTTGACTGGGTACACATATGGTTCCCTAATAGCATGTGGGCTCTGGTACAGGCCATGTCCAGCCGTCCTATCATAAGGA
TAGGGGGAGACTGTAGCATATGACGTATGAGATGGGGAGGCTGTGGCGTACGATGCGTGGGAAGGGGAGGCTGTGGCGTATGATGCGTGGGAAGGGGAGG
CTGTGGCGTATGATGCGTGGGAAGGAGAGTGGGCAAACGTGGTAGGAGCTGGGAAAGAAGACACACAACCGTTGTTAGCGAGACGACCTGCCTTAGCTGG
AGGCATTGGACCTCCATTGCTTGCGCGGATGCGTTTAGTAGCAGGGCCACTGCTACCACCACTTGAAGCACTTGATGCTGCCTTTTTC