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Detailed information on CNT30102775

BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694852	Oryza rufipogon	Oryza sativa	61.62	100	100	549	forward
CNT30672118	Oryza rufipogon	Setaria viridis	32.1	35.4	86.01	286	forward
CNT30520218	Oryza rufipogon	Setaria italica	30.86	30.49	85.82	275	forward
CNT30554393	Oryza rufipogon	Oryza glaberrima	43.55	100	100	388	forward
CNT30451908	Oryza rufipogon	Saccharum spontaneum	26.37	22.4	88.51	235	forward
CNT30143000	Oryza rufipogon	Lolium perenne	31.2	28.72	85.61	278	forward
CNT3012748	Oryza rufipogon	Zea mays	26.37	30.01	86.81	235	forward
CNT30351495	Oryza rufipogon	Eragrostis tef	32.1	65.9	84.97	286	forward
CNT30362762	Oryza rufipogon	Sorghum bicolor	24.47	20.39	88.99	218	forward
CNT30576925	Oryza rufipogon	Oryza barthii	99.66	99.22	99.21	888	forward
CNT30580685	Oryza rufipogon	Echinochloa crusgalli	23.91	22.07	88.26	213	forward
CNT30496079	Oryza rufipogon	Digitaria exilis	30.3	30.44	85.19	270	forward
CNT30116193	Oryza rufipogon	Oryza nivara	24.02	18.62	83.64	214	forward
CNT30593715	Oryza rufipogon	Eragrostis curvula	20.76	20.83	84.86	185	forward

Expression of CNT30102775

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MAYDVCEGERTKVVAAGVEDTQALLVRRPAFAGGIGPPLLARMRLVAGPLLPPLDALEVAFFFSVLAFSSSSSCL*

Sequence

>CNT30102775
ATTGCTAAACTAAGAATTGTCTTTGATTAAGTGGTCCATCAAGGTGCCGAAGGATTACATGATAGTTTATTTTTTTGGGTGTTTTTTTCATTGTTTCTGA
ACAGAATTACATAATGCAGTACAGTCTCAATGGTAGCGTACATAATTTACATCCAGGTTTCTTAGTGGTAGTACAAAGTAGTGATCTAGGCATGAGATAA
CCTAACACAATGCAGAGTAGAGTGCATCTAGTAGTAGTGGTAACTTAGTAAGCACAGATAAGATGAGATACCCAACCTACCGTTTGTAGTCAGTCACTAC
AAAATATGAGCCATTGTGCAGATTGAGTTGTCGTCGACATCATCAGTTATTTGTCATGTCATTCATCAGCGACTTTCCTGACTGATCCTACCGGTAGTAA
GCCTGGTGGAAGGCAGGTGCCATTCCATTGTTGTAAGCTCCCATTCCATTGTTGTACCCGCCATAGGCGTGGGGATAGCTTATGGGAGGGGAAGAGTACG
GCAAACCTGGCGCAAAATTAGTTACCTCCTTGGCTGGGTAGACATATGGCTCCCTGATCGCCGGTGGGCTTTGGTTGCAGTAGAGGCCATGGCGTACGAT
GTGTGCGAGGGGGAGCGGACAAAGGTGGTGGCAGCTGGGGTAGAAGACACACAAGCATTGTTAGTGAGACGACCTGCCTTCGCAGGAGGCATCGGGCCTC
CATTGCTTGCCCGGATGCGCTTAGTGGCAGGGCCACTGCTACCGCCGCTGGACGCACTTGAAGTTGCCTTTTTCTTCTCAGTCTTGGCCTTCTCCAGTTC
TTCAAGCTGCCTCTGAAGGTCCTCCAGTGGAAACTCAGCTTCCAGTTTGCGATCCTCAATGCACTTTATAACAGCCCTCAGCACGGATTGC