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Detailed information on CNT30520218

BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 7e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694852	Setaria italica	Oryza sativa	35.59	58.47	81.93	321	forward
CNT30672118	Setaria italica	Setaria viridis	74.39	83.04	99.55	671	forward
CNT30451908	Setaria italica	Saccharum spontaneum	59.76	51.38	89.98	539	forward
CNT30143000	Setaria italica	Lolium perenne	79.82	74.38	79.31	720	forward
CNT3013388	Setaria italica	Zea mays	40.24	46.36	88.43	363	forward
CNT30351498	Setaria italica	Eragrostis tef	40.47	83.72	87.95	365	forward
CNT30362762	Setaria italica	Sorghum bicolor	59.65	50.33	90.89	538	forward
CNT30102775	Setaria italica	Oryza rufipogon	30.49	30.86	85.82	275	forward
CNT30576925	Setaria italica	Oryza barthii	33.15	33.41	84.95	299	forward
CNT30581406	Setaria italica	Echinochloa crusgalli	52.11	99.58	93.19	470	forward
CNT30496079	Setaria italica	Digitaria exilis	59.42	60.43	91.42	536	forward
CNT30116193	Setaria italica	Oryza nivara	26.72	20.97	85.06	241	forward
CNT30593715	Setaria italica	Eragrostis curvula	37.69	38.29	86.47	340	forward

Expression of CNT30520218

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLPFSSRSWPSPALRAASGDPPVETQLPVYGPQHTL*

>peptide 2 (32 aa)
MMRGKGRRWHMRCGRESGQMWWELGKKTRTRC*

>peptide 3 (78 aa)
MEGRSHSIVVSCHTIGIPTIGGGVAHGWGGVWHRDADIDSGYLLNWVNIWLPDSRWAPVAVEAMTNRPVIRVRGGGGV*

Sequence

>CNT30520218
GGTACCATACATAATTTACATCCAGGTTCCTTAGTAGCAGTAAAAAGTAGTGTTCTAGGATGAGACGAGCGCTAATACAACACAGAGACATCTAATAGTA
GTGGTAAGGACATATGAGCTGAGATACCAATCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTGCGCGATTGAGTCGTTGGCATCATTAGTTGTT
GTCATGTCATTCATCAGCGACTTTTTTTTTTCCTGACTGAACCTACCGGTAGTAAGCCTGATGGAAGGCAGGAGCCATTCCATTGTTGTAAGCTGCCATA
CCATTGGCATACCCACCATAGGGGGTGGGGTAGCTCATGGGTGGGGTGGAGTATGGCATCGCGATGCCGACATTGACAGTGGCTACCTCCTCAACTGGGT
AAACATATGGCTCCCTGATAGCCGGTGGGCTCCGGTTGCAGTAGAGGCCATGACCAACCGCCCTGTCATAAGGGTAAGGGGAGGCGGTGGCGTATGATGC
GTGGGAAGGGGAGGCGGTGGCATATGAGGTGTGGGAGGGAGAGCGGGCAAATGTGGTGGGAGTTGGGAAAGAAGACACGGACGCGTTGTTAGTTCGACCT
GCCTTGGCAGGAGGCATTGGGCCTCCATTGCTTGCACGGATACGCTTGGTTGCAGGGCCGCTGCTGCCGCCACTGGAAGCACTTGATGCTGCCTTTTTCT
TCTCGGTCTTGGCCTTCTCCAGCTCTTCGAGCTGCTTCCGGAGATCCTCCAGTGGAAACTCAGCTTCCAGTTTACGGTCCTCAACACACTTTATAACAGC
TCGCAGTGCCGACTGCTCTTTCTTGTTCACATTGCTCTACAAGATAAATAACATCAGACACCATTAGGTTTCATATAACAAAGAGAGGCGCAATAGAATC
CA