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Detailed information on CNT30362762


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694852Sorghum bicolorOryza sativa19.8338.6287.26212forward
CNT30672118Sorghum bicolorSetaria viridis36.1147.7788.86386forward
CNT30520218Sorghum bicolorSetaria italica50.3359.6591.08538forward
CNT30554393Sorghum bicolorOryza glaberrima11.9732.9989.06128forward
CNT30451421Sorghum bicolorSaccharum spontaneum96.2665.7596.211029forward
CNT30143000Sorghum bicolorLolium perenne25.2627.8984.44270forward
CNT3012748Sorghum bicolorZea mays73.34100.1390.94784forward
CNT30102775Sorghum bicolorOryza rufipogon20.3924.4788.99218forward
CNT30576925Sorghum bicolorOryza barthii20.3924.3688.99218forward
CNT30580944Sorghum bicolorEchinochloa crusgalli87.8492.1587.54939forward
CNT30496079Sorghum bicolorDigitaria exilis53.664.689.53573forward
CNT30116193Sorghum bicolorOryza nivara23.6722.0283.4253forward

Expression of CNT30362762

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLPFSSQSWLSPALQVASEDPPVKTQLLGYGPQHT*

>peptide 2 (35 aa)
MSNRPVIGVRGGCGVCWVGRGGCGICGVGRGGRGI*

>peptide 3 (90 aa)
MRLVAGPLLLPLVALDAAFFFSVLAFSSSSSCFRRSSSENSASRLWSSTHLMTARSADCSFLFALLCRINNIRSHRVPSNKETLKQSQPNK

>peptide 4 (57 aa)
MSFISDLFCFLTEPTGSKPGGRQEPFHWCKLPSHCHNRHRGQGSSWVGWSMAWECRR*

>peptide 5 (52 aa)
MGGRLGKCGGSWERRHTSIVSETTCLGRRHWASIACTDALGCRAAAAATGSA*

>peptide 6 (38 aa)
MRRELNTTHLVVVVRTYKMRYPTYRCSQSLQNRAIVRF*

>peptide 7 (38 aa)
MLGGKGRLWHMRCGKGRSWHMRYGKGRSWHMRHGRETG*

Sequence

>CNT30362762
GGTACATCCGGTACTTAAGGATTACATGCTGATTTTTTTTTTAGTTTTCCAAAGTTCTGAATAGAATTACATAAGGATGCGACGACAGTCTCGCTGATAC
CATACATAATTTACATCCAGGTTCCTTAGTAGTAAAAAAAGGTAGTGGTCTAAGATGAGACGAGAGCTAAACACAACACATCTAGTAGTAGTGGTAAGGA
CATATAAGATGAGATACCCAACCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTGTGCGATTCTGAGTCGTTGGCATCATCAGTTGTTGTCATGT
CATTCATCAGCGACTTGTTTTGTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCATTGGTGTAAGCTGCCATCCCATTG
CCATAACCGCCATAGGGGGCAGGGTAGCTCATGGGTGGGGTGGAGTATGGCATGGGAATGCCGACGTTGACACTGGCTACCTCCTCAGCTGGGTAAACAT
ATGGCTCCCTGATCACCGGTGGGCTCCGGTTGCAGTAGAGGCCATGTCCAACCGGCCTGTCATAGGGGTAAGGGGAGGCTGTGGCGTATGTTGGGTGGGA
AGGGGAGGCTGTGGCATATGCGGTGTGGGAAGGGGAGGTCGTGGCATATGAGGTATGGGAAGGGGAGGTCGTGGCATATGAGGCATGGGAGGGAGACTGG
GTAAATGTGGTGGGAGCTGGGAAAGAAGACACACAAGCATTGTTAGTGAGACGACCTGCCTTGGCAGGAGGCATTGGGCCTCCATTGCTTGCACGGATGC
GCTTGGTTGCAGGGCCGCTGCTGCTGCCACTGGTAGCGCTTGATGCTGCCTTTTTCTTCTCAGTCTTGGCTTTCTCCAGCTCTTCAAGTTGCTTCCGAAG
ATCCTCCAGTGAAAACTCAGCTTCTAGGTTATGGTCCTCAACACACTTAATGACAGCTCGCAGTGCAGACTGCTCTTTCTTGTTCGCATTGCTCTGCAGG
ATAAATAACATCAGATCCCATAGAGTACCATCAAACAAAGAGACATTAAAACAGAGCCAGCCCAACAAG