Detailed information on CNT30452183


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 6e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672118Saccharum spontaneumSetaria viridis35.5445.1791.23365forward
CNT3013388Saccharum spontaneumZea mays76.34100.1392.6784forward
CNT30580944Saccharum spontaneumEchinochloa crusgalli91.5392.2587.66940forward
CNT30593715Saccharum spontaneumEragrostis curvula65.7376.0185.48675forward

Expression of CNT30452183

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLPFSSRSWLSPVLQVASEDPPVETQLLVYGPQHT*

>peptide 2 (38 aa)
MMGGKGRLWHMMGGKGRLWRMMHGKGRSWRMTRGRETG*

>peptide 3 (57 aa)
MSFISDFFCFLTEPTGSKPGGRQEPFHWCKRPSHCHNHHRGQGSSWVGWSMAWECRR*

>peptide 4 (38 aa)
MRLELNTTHLVVVVRTHKMRYPTYRCSQSLQNRAIARF*

>peptide 5 (65 aa)
MRLVAGPLLPPLVALDAAFFFSVLAFSSSSSCFRRSSSGNSASSLRSSTHLMTARSADCSFLFALL

Sequence

>CNT30452183
TAAACTAAAAAAATACTTTTAATTAAGTTCATGGTACATCAGGTACTTAAGGATTACATGCTGATTTTTTTTTTAGTTTTTCAAAGTTCTGAATAGAATT
ACATAAGGATGCGACGACAGTCTCGCTGATACCATACATAATTTACATCCAGGTTCCTTAGTAGTAAAAAAAGGTAGTGGTCTTAACATGAGACTTGAGC
TAAACACAACACATCTAGTAGTAGTGGTAAGGACACATAAGATGAGATACCCAACCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTGCGCGATT
CTGAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGACTTTTTTTGTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGA
GCCATTCCATTGGTGTAAGCGGCCATCCCATTGCCATAACCACCATAGGGGGCAGGGTAGCTCATGGGTGGGGTGGAGTATGGCATGGGAATGCCGACGT
TGACACTGGCTACCTCCTCAGCTGGGTAAACATATGGCTCCCTGATCACCGGCGGGCTCCGGTTGCAGTAGAGGCCATGTCCAACCGGCCTGTCATAAGG
GTAAGGAGAGGGTGTGGCGTATGATGGGTGGGAAGGGGAGGCTGTGGCATATGATGGGTGGGAAGGGGAGGCTGTGGCGTATGATGCATGGGAAGGGGAG
GTCGTGGCGTATGACGCGTGGGAGGGAGACTGGGTAAATGTGGTGGGAGCTGGGAAAGAAGACACGCAAGCATTGTTAGTGAGACGACCTGCCTTGGCAG
GAGGCATTGGGCCTCCATTGCTCGCACGGATGCGCTTGGTTGCAGGGCCGCTGCTGCCGCCACTGGTAGCGCTTGATGCTGCCTTTTTCTTCTCGGTCTT
GGCTTTCTCCAGTTCTTCAAGTTGCTTCCGAAGATCCTCCAGTGGAAACTCAGCTTCTAGTTTACGGTCCTCAACACACTTAATGACAGCTCGCAGTGCA
GACTGCTCTTTCTTGTTCGCATTGCTC