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Detailed information on CNT30496079

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694852	Digitaria exilis	Oryza sativa	22.77	36.79	87.13	202	forward
CNT30672118	Digitaria exilis	Setaria viridis	41.15	45.17	91.23	365	forward
CNT30520218	Digitaria exilis	Setaria italica	60.43	59.42	91.42	536	forward
CNT30451908	Digitaria exilis	Saccharum spontaneum	62.01	52.43	88.55	550	forward
CNT3013831	Digitaria exilis	Zea mays	84.67	99.73	85.09	751	forward
CNT30351493	Digitaria exilis	Eragrostis tef	44.53	82.46	85.82	395	forward
CNT30362762	Digitaria exilis	Sorghum bicolor	64.6	53.6	89.35	573	forward
CNT30102775	Digitaria exilis	Oryza rufipogon	30.44	30.3	85.19	270	forward
CNT30576925	Digitaria exilis	Oryza barthii	32.36	32.07	85.02	287	forward
CNT30580766	Digitaria exilis	Echinochloa crusgalli	97.07	85.5	90.13	861	forward
CNT30116193	Digitaria exilis	Oryza nivara	27.73	21.41	82.52	246	forward

Expression of CNT30496079

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSFISDFFFLTEPTGSKPGGRQEPFHCCKLP*

>peptide 2 (36 aa)
MPPFSSRSWPSPTLQAVSGDPPVEIQLPVSDPQRTL*

>peptide 3 (42 aa)
MTRGKGRLWHMRCGKGKWWHMTCGTESGQMWWELGKRTRTHC*

Sequence

>CNT30496079
ATAAGGCGACGACAAGTGTCTCACTGGTACCATACATAATTTACATCCAGGCTCCTTAGTAGTAGTAAAAAGTAGTGGTCTAGGATGAGACGATTGCTAA
TACAACACATCTAATAGTAGTTGTAAGAACATATAAGCTGAGATACCAATCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTGGGCGATTGAGTC
GTTGGCATCATTAGTTGTTGTCATGTCATTCATCAGCGACTTTTTTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCAT
TGTTGTAAGCTGCCATAGCATTTCCATACCCAGCATAGGGGGCAGGGTAGCTCATGGGTGGGGGTGCATATGGCATGGCAATGCCAACATTGACACTCGC
TACTTCCTCGGCTGGGTAAACATATGGCTCCCTAATAGCCGGTGGGCTCCGGTTGCAGTAGAGGCCATGCCCAGCGGGCCTGTCATAAGGGTAAGGGGAG
GCAGTGGCATATGACACGTGGGAAGGGGAGGCTGTGGCATATGAGGTGTGGGAAGGGGAAGTGGTGGCATATGACGTGTGGGACGGAGAGCGGGCAAATG
TGGTGGGAGCTGGGAAAGAGGACACGGACACATTGTTAGTTAGACGACCTGCCTTGGCAGGAGGCATTGGACCTCCAGTGCTTGCACGTATACGCTTGGT
TGCAGGGCCACTGCTGCCGCCACTAGAAGCACTTGATGCCTCCTTTTTCTTCTCGGTCTTGGCCTTCTCCAACTCTTCAAGCTGTTTCCGGAGATCCTCC
AGTGGAAATTCAGCTTCCAGTTTCCGATCCTCAACGCACTTTATAACAGCTCTCAGCGCAGACTGCTCTTTCTTGTTCACATTGCTC