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Detailed information on CNT30116193


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LUV4|FRL4A_ARATH, E-value = 1e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672118Oryza nivaraSetaria viridis20.9729.8385.48241forward
CNT30520218Oryza nivaraSetaria italica20.9726.7285.06241forward
CNT30451421Oryza nivaraSaccharum spontaneum22.0216.1784.19253forward
CNT30136541Oryza nivaraLolium perenne19.2326.8587.78221forward
CNT3012748Oryza nivaraZea mays21.6731.882.33249forward
CNT30351500Oryza nivaraEragrostis tef13.7537.7186.71158forward
CNT30362762Oryza nivaraSorghum bicolor22.0223.6783.4253forward
CNT30106087Oryza nivaraOryza longistaminata25.0785.9798.96288forward
CNT30102775Oryza nivaraOryza rufipogon18.6224.0283.64214forward
CNT30575476Oryza nivaraOryza barthii58.1410099.7668forward
CNT30580977Oryza nivaraEchinochloa crusgalli12.4525.5490.21143forward
CNT30496079Oryza nivaraDigitaria exilis21.4127.7382.52246forward

Expression of CNT30116193

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MGRGANECGIGSGGGRRRRCTGVVGETACLGRGHRSSGACPDALVGWTRATTAGTA*

>peptide 2 (36 aa)
MPPFSSRSWPSPVLPAAHGDPPMETQLRVCGPQHTL*

>peptide 3 (78 aa)
MRLLAGPELPPLELLDAAFFFSVLAFSSSSSRSRRSSNGNSASSLWSSTHFITARSADCSFLLALLCNRSNIRPSNLV*

Sequence

>CNT30116193
GCCGGATTTTTTTTTGTGGGTTTTAGAGTGGTTTAGACTGAATTACAACACAAGATGACGACGAGGGTCCAGGGACAACACGTCCATAATTTACATTCAG
TTTCTTCAGTGCGAAGTAGCGAGAGCAGCTAATAACGGGGAGAACTAACCAACACAAGCATCTTCTAGTATTAAGGAACACACGCCCCCACCCACCTACC
GTTGTAGTCAGTCACTACAAAACATGGCCATGGTGGCGAGCCGCCCTGCCACCATCAGCGATTCAGCTCATTGTCATTTCATCGGCTTCGACTGATCCTA
CCGGTAGTAAGCCTGGTGGTGAAAGGCTGGGGCCATTGCATTGCTGTAGCCGATTCCATTGCTGTATCCAGCATAGGGCTCCCTCATTGCCAGTGTGTTC
TGGCCACAGTAGAGGGGGTGTGCAGCTGGCCTATCATAAGAGTAAGGAGATGCTGTACCGTAGGAGGCATGGGACGGGGAGCGAATGAATGTGGCATTGG
TAGTGGTGGTGGCAGGCGAAGACGGTGTACCGGTGTAGTCGGTGAGACGGCCTGCCTTGGCAGGGGGCATCGGTCCTCCGGTGCTTGCCCGGATGCGCTT
GTTGGCTGGACCAGAGCTACCACCGCTGGAACTGCTTGATGCCGCCTTTTTCTTCTCGGTCTTGGCCTTCTCCAGTTCTTCCAGCCGCTCACGGAGATCC
TCCAATGGAAACTCAGCTTCGAGTTTGTGGTCCTCAACACACTTTATAACAGCCCGCAGTGCAGACTGCTCCTTCTTATTGGCATTGCTCTGCAACAGAA
GTAATATTAGACCCTCTAATTTGGTATAAGAAACAAGTGCACCACTTGAAAGAAATTGCCTCTGGAGACTAAAAGGATCAAATGCATTGCTAGCATGCAA
TCAGGGGTACAGTAGTATGATACCACCAAGAAGCACTGATCAACATATTTCAGAATGCCCTGTGGACATACCACTTACAGAGTAGAGACTTCATATTAGG
AGGTCAGCATTGACTTCAAATAATTATATAGAACCATTTCACTTACCCCAGATTGGCCAGTGCTAGTACTCAGGTTATCTGAATTTGAGGGTATCTTCTT
TGAATCTTCAAGGTAGGCTTTTAAAAGAGGGGCTGGGGGGAATTTTTCC