Detailed information on CNT3013388


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 9e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672118Zea maysSetaria viridis46.3644.9388.43363forward
CNT30520218Zea maysSetaria italica52.1145.2387.01408forward
CNT30452183Zea maysSaccharum spontaneum100.1376.3492.6784forward
CNT30351498Zea maysEragrostis tef54.0297.0284.16423forward
CNT30362478Zea maysSorghum bicolor100.1390.1191.07784forward
CNT30580944Zea maysEchinochloa crusgalli99.6276.5586.28780forward
CNT30593715Zea maysEragrostis curvula81.7472.0781.72640forward

Expression of CNT3013388

Peptides detected in this lncRNA

>peptide 1 (39 aa)
TQPTVVVSRYKTGPLSGVSSRWHHQLLSCHSSATSSFPD*

>peptide 2 (52 aa)
MMHGEGRVWRMMHGLGRLWRMRRGMGRCWRMTRGRETGSMWWELGEKTRKHC*

>peptide 3 (35 aa)
MLPSSSRSWLSLVLQVASEDPPVETQLLVYDPQHT*

>peptide 4 (37 aa)
PTYRCSQSLQNRAIERGFESLASSVVVMSFISDFFVS*

>peptide 5 (65 aa)
MRLVAGPPLPPLVALDAAFFFSVLAFSSSSSCFRRPSSGNSASSLRSSTHLMTARSADCSFLFTLL

Sequence

>CNT3013388
ACCCAACCTACCGTTGTAGTCAGTCGCTACAAAACAGGGCCATTGAGCGGGGTTTCGAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGA
CTTCTTCGTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCATTGGTGTAAGCTGGCATCCCGTTGCCATAGCCGCCGTA
GGGGGCAGCAGGGTAGCTCATGGGCGGGGTGGAGTAGGCCATGGGAATGCCGACGTTGACGGTGGCTACCTCCTCAGCTGGGTAAACATATGGCTCCCTG
ATCACCGGCGGGCTCCGGGTGCAGTACACGCCGTGTCCAACCGGCCTGTCGTAAGGGTAAGGGGAGGCTGTGGCGTATGATGCATGGGGAGGGGAGGGTG
TGGCGTATGATGCATGGGTTGGGGAGACTGTGGCGTATGAGGCGTGGGATGGGGAGGTGTTGGCGTATGACGCGTGGGAGGGAGACTGGGTCAATGTGGT
GGGAGCTGGGAGAGAAGACACGCAAGCATTGTTAGTGAGACGACCTGCCTTGGCAGGAGGCATTGGGCCTCCAGTGCTCGCACGGATGCGCTTGGTTGCA
GGGCCGCCGCTGCCGCCACTGGTAGCGCTTGATGCTGCCTTCTTCTTCTCGGTCTTGGCTTTCTCTAGTTCTTCAAGTTGCTTCCGAAGACCCTCCAGTG
GAAACTCAGCTTCTAGTTTACGATCCTCAACACACTTGATGACAGCTCGCAGTGCAGACTGTTCTTTCTTGTTCACATTGCTC