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Detailed information on CNT30143000


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LUV4|FRL4A_ARATH, E-value = 1e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694852Lolium perenneOryza sativa2544.0885.54242forward
CNT30672118Lolium perenneSetaria viridis27.6933.1784.7268forward
CNT30520218Lolium perenneSetaria italica74.3879.8279.31720forward
CNT30451908Lolium perenneSaccharum spontaneum25.5223.5586.64247forward
CNT3012748Lolium perenneZea mays25.4131.4284.55246forward
CNT30351500Lolium perenneEragrostis tef27.3863.2582.64265forward
CNT30362762Lolium perenneSorghum bicolor27.8925.2684.44270forward
CNT30102775Lolium perenneOryza rufipogon28.7231.285.61278forward
CNT30576925Lolium perenneOryza barthii31.233.7485.1302forward
CNT30580766Lolium perenneEchinochloa crusgalli75.172.1979.64727forward
CNT30496504Lolium perenneDigitaria exilis75.3174.7779.56729forward
CNT30593715Lolium perenneEragrostis curvula28.230.7482.78273forward

Expression of CNT30143000

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPSSSQSWPSPGLQAASEDPPVETQTLVCGPRCIL*

>peptide 2 (38 aa)
MMCERGRHMMSERERHMMFARGSEQMQWRLGRKTQTCC*

>peptide 3 (33 aa)
MRLLAGSLVPPLEALEDAFFFSVLAFSRSSSCF*

>peptide 4 (77 aa)
MSRRHHIGYCHVIHQRRFLTDPTGSKPGGRLGPFHCCKLANHCCIRHRWQGRSWEGMSMALQTRHWVPRWLGRHMAL*

Sequence

>CNT30143000
CTGAAATTGATTTGATTAAGCACATGATTGATCAAGTACTGAAGAATTACATGATATTTTTTTTAAGGTTTTTCCCTTGTTCCTGAATAGGGACAGAATT
ACAAAAGGCGGTAAGTCTCGTGGACGGAACACATAATTTACATCCAGATTTCTTAGTAGTACAAAGTAGTGTTCTAACAGGAGAGGACTAAGACAAAGCA
TTTAGTAGTAGTAGTGGTAAGAACATATGAGAACTGCGATGAGGTACCAGCCTACTGTTGTAGTCAGTCGCTACAAAATAGGGCCATTGCCGTAATGAGT
CGTCGACATCATATTGGTTATTGTCATGTCATTCATCAGCGACGTTTCCTGACTGATCCTACCGGTAGTAAGCCTGGTGGAAGGCTGGGGCCATTCCATT
GTTGTAAGCTGGCAAACCATTGCTGTATCCGCCATAGGTGGCAGGGTAGGTCATGGGAGGGGATGAGTATGGCACTCCAAACCCGACACTGGGTACCTCG
TTGGCTGGGTAGACATATGGCTCTCTGATCGCCGGAGGGCTCCGGTTACAGTAGAGGCCATGCGCGGGCTGCCTATCATAAGGGTAGGAGGAGGGTGTGG
CGTATGATGTGTGAGAGGGGGAGGCATATGATGTCTGAGAGGGAGAGGCATATGATGTTTGCGAGGGGGAGCGAACAAATGCAGTGGCGACTGGGAAGGA
AGACACAGACGTGTTGTTAGTGAGGCGACCTGCCTTAGCAGGTGGCATTGGGCCTCCGTTGCTCGCCCGGATGCGCTTGTTGGCAGGTTCACTGGTACCG
CCGCTGGAGGCGCTTGAGGATGCCTTCTTCTTCTCAGTCTTGGCCTTCTCCAGGTCTTCAAGCTGCTTCTGAAGATCCTCCAGTGGAAACTCAGACTCTA
GTTTGCGGTCCTCGATGCATTTTATGACAGCTCGCAGCGCTGACTGCTCTTTCTTGTTCGTGTTGCTC