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Detailed information on CNT30139541


BLAST search results

BLAST vs Swiss-Prot:
sp|P14717|PAL1_ORYSJ, E-value = 3e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Lolium perenneOryza sativa18.7321.694.18189forward
CNT30675764Lolium perenneSetaria viridis9.3237.4592.5594forward
CNT30640936Lolium perenneNymphaea colorata18.7338.2683.07189forward
CNT30225299Lolium perenneHordeum vulgare16.3548.8293.33165forward
CNT30553532Lolium perenneOryza glaberrima25.9734.5283.97262forward
CNT30607757Lolium perenneGossypium raimondii5.9520.4186.6760forward
CNT30572080Lolium perenneVitis vinifera22.335.7779.56225forward
CNT30149709Lolium perenneBrachypodium distachyon14.875092.67150forward
CNT30576230Lolium perenneOryza barthii10.1138.3586.27102forward
CNT30583892Lolium perenneEchinochloa crusgalli21.6136.9582.11218forward

Expression of CNT30139541

Peptides detected in this lncRNA

>peptide 1 (49 aa)
IRMSNGRQSSIAYFTPKNTTTIYILGKNNLASQGVRIARHGRAATQSMD*

>peptide 2 (43 aa)
MGSGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVR*

>peptide 3 (51 aa)
MYVEDMSLRMSTASAVFLAETRPSEFTSWLCCSALWTWLVTGFARYCSSEQ*

Sequence

>CNT30139541
CTATTAGGATGTCAAATGGGAGGCAATCCAGTATAGCATACTTCACTCCCAAAAATACAACGACAATATATATCTTAGGAAAAAACAACCTGGCCAGCCA
AGGCGTGCGCATTGCACGCCATGGCAGAGCTGCTACACAATCGATGGATTAATAACAACACCACACGTTGATCAACACCAACGCACGAAAGAAGGTCAAA
AGAGACACGATGTGAAGGAACATATACGAATCAAGCGCCTTATTCTTGGATGTACTCTCCTCTTTTGTAGCCTCCCCCGATCGCACGGACCGCCGCCGCT
CTAGACGTTGATGGGCAGTGGCTCGCCGTTCCACTCCTTGAGGCACTCGAGCATGGGGTCGATGAGCTTGCCCTGGCTGATGCCCAGGAACACCTTGTTG
CACTCCTCGCCGGGGGACAGGAGCTTCTCGCCGGTGAGGTAGACGCAGCCCAGCTCCTCGCGGACGAAGCGGTACAGCGGGAACGACCTGCTCTCCTTGA
TCAGGTTCGGGATCGGCGCGGTGCCGCTCTCGAAGGCGACGCGGGCGGCCTCGATCTCCCGTGGCAGCGCCGAGTGCAGCTCCTCCTCGAACTTGGTGAT
CTTGGAGAACACCGTGGCCTCGCCCTCGGCCTCGGCGGCGCCGGTGGTGAGGGCGTGGTCGACGAGCACGGCGCGCAGCTTCTGCATGAGCGGGTAGTTG
GCGCTGCACGCGTCGTCAGCGTAGCTGAACACCGCCTCCTTGTCGACGGCCTGGCACAGCGCCACCATGTACGTGGAGGACATGAGCTTGAGGATGTCCA
CGGCCTCGGCGGTCTTCCTGGCGGAGACGAGGCCGAGCGAGTTCACGTCCTGGTTGTGCTGCTCCGCGCTCTGGACGTGGTTGGTGACCGGGTTTGCGAG
GTACTGCAGCTCAGAGCAGTAGGACGCCATGGCGATCTCGGTGCCCTTGAACCCGTAGTCCAGGCTCGGGTTGCGGCTGCCCGCCAGGTTGGAGGTGAGC
CCGTTGTTG