« Back to Ficus carica search


Detailed information on CNT30113881


BLAST search results

BLAST vs Swiss-Prot:
sp|P45730|PALY_POPTR, E-value = 2e-165

BLAST vs NONCODE:
NONPOPT001615, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Ficus caricaOryza sativa20.324.9179.82218forward
CNT30640936Ficus caricaNymphaea colorata9.420.4584.16101forward
CNT30533597Ficus caricaEucalyptus grandis40.4148.4479.49434forward
CNT30317648Ficus caricaCorylus avellana50.3793.2880.04541forward
CNT30517474Ficus caricaJuglans regia11.6420.8384125forward
CNT30727764Ficus caricaCorchorus capsularis13.8720.7881.21149forward
CNT30630760Ficus caricaVigna unguiculata18.2525.9683.67196forward
CNT30196554Ficus caricaPisum sativum13.3130.4983.92143forward
CNT30162471Ficus caricaPistacia vera51.6866.7982.16555forward
CNT30636813Ficus caricaCapsicum annuum26.8216.980.21288forward
CNT3096043Ficus caricaSolanum tuberosum26.4428.4378.17284forward
CNT30568715Ficus caricaActinidia chinensis36.0379.379.84387forward
CNT30510882Ficus caricaSolanum lycopersicum2364.3279.76247forward
CNT30173113Ficus caricaTrifolium pratense4.6622.329050forward
CNT30144087Ficus caricaMedicago truncatula26.8285.7182.64288forward
CNT30435636Ficus caricaAegilops tauschii18.6228.9983200forward
CNT30242796Ficus caricaAvena sativa17.545.7481.91188forward
CNT30135526Ficus caricaLolium perenne20.672680.18222forward
CNT30607757Ficus caricaGossypium raimondii14.7153.7480.38158forward
CNT30620237Ficus caricaCajanus cajan22.8128.4981.63245forward
CNT30573527Ficus caricaVitis vinifera51.8636.4878.82557forward
CNT3024838Ficus caricaPopulus trichocarpa51.9645.3780.65558forward
CNT3036865Ficus caricaCucumis melo13.0429.0582.86140forward
CNT30329128Ficus caricaDioscorea rotundata20.588.6981.9221forward
CNT30149709Ficus caricaBrachypodium distachyon8.4730.3385.7191forward
CNT30101950Ficus caricaOryza rufipogon11.0826.181.51119forward

Expression of CNT30113881

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LKGYFITFQHVRKKKKDYNRANNKIWVLQHFMSHTRC*

>peptide 2 (52 aa)
MLDEYLPQFLHQRIGGEAGVINVGKDILSIHHLEQILLAEPRRVKLAVYAGC*

>peptide 3 (28 aa)
MGSDRVGKVLELRAIGSHGDLGTFESIIQ

>peptide 4 (57 aa)
MIFPWHIAVNTLSNSSPGDLTFSPVRKLAPNSSLTNRYNGYDRHSLILFAIAAFPLS*

>peptide 5 (58 aa)
MAWQRATKNVEDMSLRMSRASAVLREEINPNELTSWLCCSALWTWVVTGLARYWSSEQ*

Sequence

>CNT30113881
AACTGAAGGGATATTTCATTACTTTCCAACATGTAAGGAAAAAAAAAAAAGATTACAATAGAGCAAACAACAAAATATGGGTTTTACAACACTTCATGAG
TCACACACGTTGTTGACAATCCCTTCCATCAACAACATTTTATGAACATATAAATATATATAAAATATCACTATTAAAAAAAACGACATTCAAACGCAGC
CCAAAGAACAAAAAACGACACTAACAGATAGGAAGGGGTTGACCATTCCAGCCACAAAGAACAAAAAACGACACTAACAGATAGGAAGGGGTTGACCATT
CCAGCCACAAAGGCACTCCAGCATTGGGTCAATGATCTTCCCTTGGCACATTGCAGTGAACACCTTGTCAAACTCCTCCCCTGGTGATCTAACCTTCTCA
CCGGTCAGAAAACTAGCCCCCAACTCCTCCCTCACAAACCGGTACAACGGGTACGATCGGCACTCGTTGATCTTGTTCGCGATCGCGGCGTTTCCGCTCT
CATAAGCAAGCCTTGAACTCTCCACCTCCTTAGGCAAAAGGGCCTTCAGCTCCTCCTCAAAGGCTTCAATCTTTTGGAAGATTGAAGTGCTCGAATTCTT
CTCTCTCTCGCCGTTTGTCAACGCATGCTCGACGAGTATTTGCCTCAATTTTTGCATCAACGGATAGGTGGCGAGGCAGGGGTCATCAATGTAGGCAAAG
ACATACTCTCTATCCACCACCTTGAGCAGATCCTTCTCGCAGAACCTCGAAGGGTGAAGCTCGCCGTTTACGCCGGTTGTTAGTACTCTCTTGGCCACTT
GGCTCACCGTGTTCTTAACCGTGTGCTTCAAATTCTCCTCCAAGTGCCTCAAGTCAATGGCTTGGCAAAGAGCCACCAAGAATGTGGAAGACATGAGCTT
GAGAATGTCAAGGGCCTCGGCGGTTTTGCGCGAAGAGATCAATCCCAACGAGTTGACATCTTGGTTGTGTTGCTCGGCGCTTTGGACATGGGTAGTGACA
GGGTTGGCAAGGTATTGGAGCTCAGAGCAATAGGAAGCCATGGCGATCTCGGCACCTTTGAATCCATAATCCAA