Detailed information on CNT30254573


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DZE0|PAL2_ORYSJ, E-value = 1e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640936Avena sativaNymphaea colorata20.1610.3292.1651forward
CNT30100237Avena sativaOryza rufipogon49.417.8493.6125forward

Expression of CNT30254573

Peptides detected in this lncRNA

>peptide 1 (83 aa)
SRSFSQKRAMWRPPMLFMLRVFLATCITQFLTAVFMFSSRWRRRSGRASSRPGCAAPRSAHGWSLGCPRTAAQSSTRPWRSQRL

>peptide 2 (82 aa)
QVLLAEAGDVEAAHVVHAQGLLGHLHHAVPHSCLHVLLQVAEEIRPSEFTSWLCCSALCTWLVTGLPKNCSSEQYEAMAISAP

>peptide 3 (83 aa)
AGPSRRSGRCGGRPCCSCSGSSWPPASRSSSQLSSCSPPGGGGDQAERVHVLVVLLRALHMVGHWVAQELQLRAVRGHGDLSAF

Sequence

>CNT30254573
AGCAGGTCCTTCTCGCAGAAGCGGGCGATGTGGAGGCCGCCCATGTTGTTCATGCTCAGGGTCTTCTTGGCCACCTGCATCACGCAGTTCCTCACAGCTG
TCTTCATGTTCTCCTCCAGGTGGCGGAGGAGATCAGGCCGAGCGAGTTCACGTCCTGGTTGTGCTGCTCCGCGCTCTGCACATGGTTGGTCACTGGGTTG
CCCAAGAACTGCAGCTCAGAGCAGTACGAGGCCATGGCGATCTCAGCGCCTTT