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Detailed information on CNT30710734


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 4e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520395Glycine maxSetaria italica29.1833.7183.15178forward
CNT3062296Glycine maxArabidopsis lyrata56.2373.7681.92343forward

Expression of CNT30710734

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDKVWVSQIVKPTFGEYLGSSFEPHWLLEVHSQPLL*

>peptide 2 (57 aa)
MANLPFLISLTLSSAKVTGSSARPSGSKYWPPGPIRITWKPSTARMLCAWTRFGFPK*

Sequence

>CNT30710734
AATCCAACAATTATTGTGATCATATAATCTACACATAAATCACAAAGGTAAGCACGAGGGATGGGATCATAGGGATTAGGGAAGAAGAAGTCATATACAT
TTTAAGACCCTGGGGAAAACTTAGTGGCATAGACCCAAGCATTGTTGGCCACAGGGTTGTCTAGGTGGTCCAAAAGGTTCTCCAATGGACCTTTTCCAGT
GACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATGGCCAACCTTCCATTCTTGATCTCCTTGACTTTGAGCTCAGCAAAAGTGACTGGGTCATCA
GCTAGGCCCAGTGGGTCAAAGTACTGGCCCCCAGGGCCCATTAGGATAACTTGGAAGCCCAGCACTGCCAGGATGCTTTGTGCATGGACAAGGTTTGGGT
TTCCCAAATAGTCAAGCCCACCTTCGGAGAATATTTGGGCTCCAGCTTTGAACCACACTGGCTCCTTGAAGTCCACTCTCAACCACTTCTCTAGCACCTC
TGGGGTGATGCATCCTAGTGCTCCAAAACTTGTTGTTGCTGCCATCAATGTTGCTGCCATGACTTCCAACTTCCTAGGTTTGAAACCTTAAGTTACTTGA
AAAATAGAAG