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Detailed information on CNT30617621


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696313Sesamum indicumOryza sativa46.978.9895.97124forward
CNT30198622Sesamum indicumPisum sativum56.0618.289.19148forward
CNT30502639Sesamum indicumNicotiana attenuata44.711.6886.44118reverse complement
CNT30396203Sesamum indicumTriticum turgidum7567.8191.41198forward
CNT30509771Sesamum indicumSolanum lycopersicum71.2117.9493.09188reverse complement
CNT30555485Sesamum indicumOryza glaberrima73.4815.5391.24194forward
CNT30441793Sesamum indicumAegilops tauschii7543.3390.91198reverse complement
CNT30314546Sesamum indicumCamelina sativa60.2317.7396.86159forward
CNT3018193Sesamum indicumZea mays77.2773.6591.18204forward
CNT30339731Sesamum indicumEragrostis tef36.3628.6696.8896reverse complement
CNT30360899Sesamum indicumLactuca sativa74.2434.7593.88196reverse complement

Expression of CNT30617621

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MMISIQMDLIYIYRIMKYHMGGYLYEFKSVESFMV*

>peptide 2 (31 aa)
YGFLDVDDDIYTDGSYIYISYNEVPHGWISI*

>peptide 3 (29 aa)
MNSNLSNHSWYDLLHPRSSRSVIWLMFFM*

Sequence

>CNT30617621
CATACGGCTTTCTGGATGTAGATGATGATATCTATACAGATGGATCTTATATATATATATCGTATAATGAAGTACCACATGGGTGGATATCTATATGAAT
TCAAATCTGTCGAATCATTCATGGTATGATCTTCTACATCCTAGGTCTTCCCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGACCGAATGA
CTCTATGAAATTACGTCGATACTTCCACATATTATGGGTAACGTAGGAGACATCTCTATTTGTT