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Detailed information on CNT30696313


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END5|RR3_ORYNI, E-value = 2e-130

BLAST vs NONCODE:
NONORUT000960, E-value = 5e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617621Oryza sativaSesamum indicum8.9846.9795.97124forward
CNT30502639Oryza sativaNicotiana attenuata16.4422.4881.5227reverse complement
CNT30396203Oryza sativaTriticum turgidum14.4168.1597.99199forward
CNT30441793Oryza sativaAegilops tauschii14.5543.9897.01201reverse complement

Expression of CNT30696313

Peptides detected in this lncRNA

>peptide 1 (47 aa)
RRPAIFTFTPFISVFLVNSMAFFIAFRNETLFFNWKAIYSARMLGCL*

>peptide 2 (54 aa)
MWMRFCALKTRSNLSRRSVGTFLASFLSPLFFFFILGLRVPSSGLCSSCSIQIE*

>peptide 3 (34 aa)
MDLKIISISLLYLVQLLYDTWFFLWENYVLEPEV*

>peptide 4 (39 aa)
MVFFMGELRPRARGLNLFIIVLLLTSALVMNKFALSKSL*

>peptide 5 (32 aa)
MVILGCTKSETKWIYFLSHIFLFYFFLPGIKS*

>peptide 6 (33 aa)
MTHGFFYGRTTSSSPRSEFIHNSTPTDFGFSDE*

Sequence

>CNT30696313
CGAGACGGCCTGCAATTTTTACTTTTACTCCCTTTATATCTGTTTTTTTAGTTAATTCAATGGCTTTTTTCATTGCCTTTCGGAATGAAACTCTATTTTT
TAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGTTGTCTATAAGGTTCTTTCACTTTTTCGATCCCAATATTAAGTCTCTGGTTTACAGAATTAACT
TCTTTTTGTAGATCTTTCTCTAATTCTTCGATTGCTCCTTTTTTCTTTAATAAATTGGGGAATCCAATATGGATTATGACGTGGATTGTATCGATTTCTT
TTTGAATTTCTATATGTGTAATTACTTCGGAACTTGAGCCTGAGTCCATTTTTTTATTATGTGTAATTACTTCGAAACTTGAGTCTGCTTCTATTTTTCT
ATTCGAGCCCTTTTTCCTATTCTTTTGTATATAGTTCTTGATACAATTCCGTATTTTTTTATCTTCCTGTAGACCTTCAGAATAATTTTTTGGTTGTGCG
AACCAAAAGGAATGGTGATTTTGGGTTGTACCAAGTCTGAAACCAAGTGGATTTATTTTTTGTCCCATATTTTTCTATTCTATTTTTTTTTACCGGGAAT
CAAATCTTAGATGGATCTAAAGATTATTTCGATTTCTTTACTATATTTAGTACAATTGTTATATGACACATGGTTTTTTTTATGGGAGAACTACGTCCTC
GAGCCCGAGGTCTGAATTTATTCATAATAGTACTCCTACTGACTTCGGCTTTAGTGATGAATAAATTTGCTTTGTCGAAATCCCTATAATGAGTAGCATT
TGCTGCTGCCGAATAAACCAACTTTAAGATGGGATAAGATGCTCGATAAGGCATGAGGTTCAATATCATAACAGTTTCTTCGTAGTAACGCCAACGAATC
TCATCCAGAACTCTTTTGTACTTTGAAAACGGACATGTGGATGCGTTTTTGTGCTTTGAAAACCCGTTCGAACTTAAGTAGACGATCGGTTGGTACTTTT
CTTGCGAGTTTCCTTAGCCCACTCTTCTTCTTCTTTATCCTAGGTCTCCGCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGATCGAATGAC
TCTATGAAATTACGTCGATACTTCTACATATTATGGGTAACGTAGGAGACATCCCTATTTTCCCCCGGGGGTCTTAATTACCACTGCTTAGCTTTCAATT
CGCCTCTGACCATCAAATTAAATGTGAATAACCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTCCGGTTCTGTGCGTGCTTCAAACAATTTTGTCTTCT
CCATATTACCATATCTCTAGAGTCAATAATTTTCTATGAGGAACTACTGAACTCAATCACTTGCTGCCGTTACTCAACAGT