Detailed information on CNT30198622


BLAST search results

BLAST vs Swiss-Prot:
sp|P31163|RK2_PEA, E-value = 8e-50

BLAST vs NONCODE:
NONBRAT006199, E-value = 1e-125

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690835Pisum sativumOryza sativa39.2434.8685.89319forward
CNT30617621Pisum sativumSesamum indicum18.256.0689.19148forward
CNT30396203Pisum sativumTriticum turgidum27.6877.0587.11225forward
CNT30441793Pisum sativumAegilops tauschii27.6849.2387.11225reverse complement
CNT30314546Pisum sativumCamelina sativa68.5162.190.84557forward
CNT3018193Pisum sativumZea mays18.4554.1588.67150forward
CNT30339731Pisum sativumEragrostis tef11.6928.3689.4795reverse complement
CNT30103751Pisum sativumOryza rufipogon18.826888.24153reverse complement

Expression of CNT30198622

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRQMCAFRLGSYSMVMIIPYMSFSLRLKSILRYRRL*

>peptide 2 (29 aa)
ASCYDLLHPRSFCSVPSSGLCSSCSIQTE*

>peptide 3 (44 aa)
PHVMIFYILGLSVPFLHLAYVLHVAFRPNDSMKLRCYLHLVRVA*

Sequence

>CNT30198622
TGCCTCATGTTATGATCTTCTACATCCTAGGTCTTTCTGTTCCGTTCCTTCATCTGGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAA
ATTACGTTGCTACTTACACCTAGTACGGGTAGCGTAGGAGACATTTCTATTTTTTCCCGGAGGAATCCTTAGAATTACCACTGCTTCGCTTTCAATTTGC
CTTTGACCATCAAATGAAATGTGAATAATCCTTGTCTTCCCGTTAGTTGAAACGAGGAGTTTCGCTTTCAATTTGCCTTTGACCATCAAATGAAATGTGA
ATAATCCTTGTCTTCCCGTTAGTTGAAACGAGGAGCGCTTCGTGTTCTGTCGGTGCTTGAAACAATTTTGTCTTCTCCATATTACTACATCTCTAGGGTC
AATAATTGTATATTGGGAACTACTGAACTCAATCACTTGCTGCCGTTATTCTTCAGTTTTCTGTTGAAGTCTATCTACTCCAATTGGATCAGTGATCGAT
TTCTAGGTTTCGCCATAAACCTAATTGGTTGCTTCCAATTACGCAAATCAATAGTTCAAACCGCACTCAAAGGCAGGGCATTTCCCATTTTTATAGGAAC
TTCTGTACCATAAACAATGGTATCTCCAATTATAGCCCCTTTGGGATGTAAAATATATCTTTTCTCACCATCCCCATAGTGTATGAGACAAATGTGTGCA
TTTCGATTAGGGTCATATTCTATGGTTATGATTATACCATATATGTCTTTTTCATTGCGTCTAAAATCAATTTTACGGTATAGACGCTTATGACCTCCCC
CTCTATGCCCTGT