Detailed information on CNT30339731


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697733Eragrostis tefOryza sativa71.9463.9395.44241forward
CNT30617621Eragrostis tefSesamum indicum28.6636.3696.8896reverse complement
CNT30198622Eragrostis tefPisum sativum28.3611.6989.4795reverse complement
CNT30502639Eragrostis tefNicotiana attenuata24.488.1286.5982forward
CNT3093954Eragrostis tefSolanum tuberosum28.665.8692.7196reverse complement
CNT30396203Eragrostis tefTriticum turgidum29.8534.2598100reverse complement
CNT30509771Eragrostis tefSolanum lycopersicum69.8522.3389.32234forward
CNT30441793Eragrostis tefAegilops tauschii29.8521.8898100forward
CNT30314546Eragrostis tefCamelina sativa28.6610.796.8896reverse complement
CNT3018193Eragrostis tefZea mays29.8536.198100reverse complement
CNT30683778Eragrostis tefTriticum urartu30.1532.0697.03101reverse complement
CNT30360899Eragrostis tefLactuca sativa28.6617.0293.7596forward

Expression of CNT30339731

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLHEEHKPHERFGRFGFLFHISTHVVLHHTIHIRSICLEIVIYI*

>peptide 2 (30 aa)
MKNISHMSDSADLDFFFIYPLMWYFIIRFI*

>peptide 3 (39 aa)
MLWKKLVQFGKGFFENKEASTSTDMPLGTAIHNIEITRER

Sequence

>CNT30339731
TAGGGATGTCTCCTGCGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGATCTGAATGCTACATGAAGAACATAAGCCACATGA
GCGATTCGGCAGATTTGGATTTCTTTTTCATATATCCACTCATGTGGTACTTCATCATACGATTCATATAAGATCCATCTGTCTAGAGATCGTCATATAC
ATCTAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAACAAAGAAGCATCTACTTCAACCGATATGCCCTTAGGCAC
GGCCATACATAACATAGAAATCACACGTGAAAGGG