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Detailed information on CNT30555485


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00058|MI25_ORYSI, E-value = 2e-50

BLAST vs NONCODE:
NONMTRT001482, E-value = 2e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697733Oryza glaberrimaOryza sativa7.7725.7398.9797reverse complement
CNT30535436Oryza glaberrimaEucalyptus grandis21.1491.6791.29264reverse complement
CNT30617621Oryza glaberrimaSesamum indicum15.6974.2491.33196forward
CNT30222882Oryza glaberrimaHordeum vulgare21.2227.8198.87265forward
CNT30396203Oryza glaberrimaTriticum turgidum15.7767.4798.48197forward
CNT30592658Oryza glaberrimaMusa acuminata21.1412.0690.53264forward
CNT30237729Oryza glaberrimaBrassica oleracea8.5721.9797.2107reverse complement
CNT30441793Oryza glaberrimaAegilops tauschii15.7743.1196.95197reverse complement
CNT30314546Oryza glaberrimaCamelina sativa14.5720.2992.31182forward
CNT3018193Oryza glaberrimaZea mays15.7771.1298.48197forward
CNT30688229Oryza glaberrimaTriticum urartu21.228.8298.87265forward
CNT30353933Oryza glaberrimaEragrostis tef7.5321.0396.8194reverse complement
CNT30360899Oryza glaberrimaLactuca sativa15.0533.3391.49188reverse complement

Expression of CNT30555485

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MNFLYLTEQLPIPLFQLHQMIFRIGQDSPVYGPFYMVVDPFL*

>peptide 2 (36 aa)
YFTDIDFRLSTASRLVQSVVQRTIDTPKTSKDGYIK*

>peptide 3 (38 aa)
MEFSHISTGESNIDNRMMKYHMSGYIGKESKSAESLML*

>peptide 4 (47 aa)
MGLCRIILFFSNMLEDLEMIFQFRGEFAKLRFHKEFDGVFPYFDRRI*

Sequence

>CNT30555485
TACTTCACTGATATCGATTTTCGCCTAAGCACGGCCTCTAGGTTAGTTCAAAGTGTAGTACAACGAACTATCGATACACCGAAAACGAGTAAAGATGGGT
ACATAAAATGAATTTCCTATACTTGACCGAACAACTTCCAATTCCGTTATTTCAACTACACCAAATGATCTTTCGAATTGGTCAAGACTCTCCTGTTTAT
GGCCCCTTCTATATGGTTGTTGATCCTTTCCTCTAGGTATTGAGATCCTTCGACAAGTTGTTCTTCCCCCGAAGAATCGTCACCAAAGACATTCTTCCAT
GGTTTTTTTACATGGGGGGGGCTCGGTTTTGTAAAAGATTATGGGTTTGTGTCGAATTATTTTATTCTTCTCGAATATGCTCGAAGATCTCGAAATGATC
TTCCAGTTCCGGGGAGAATTCGCAAAACTCCGTTTCCATAAAGAATTTGATGGAGTTTTCCCATATTTCGACCGGAGAATCTAACATAGACAATCGTATG
ATGAAGTACCACATGAGTGGATATATAGGAAAGGAATCCAAATCTGCCGAATCGCTCATGTTATGATCTTCTACATCCTAGGTCTCCGCGTTCCGTCATC
TGGCTTATGTTCTTCATGTAGCATTCAGATCGAATGACTCTATGAAATTACGTCGATACTTCTACATATTATGGGTAACGTAGGAGACTGTAGATAATGC
GATGACTGCCTATCTCTTTCGAGAAGGAGTCCTTTTTCCGATACTTACTATTGGGGTAGGCTAAGGTTGCGCACAGCGTGCCGTTGGTAATGATTCTACT
ACGGCGCTGCAAATTCGCAAGCTGATCCTAAGTAATCGTTGTTGTTCATTGGATTCCCCCGGAATTACTTCGTTAGGATTGAAGAATTGCTGCAATTCTT
CCTGAATAGACTCGATTCTCCCGTCGAGAGTTTCTTTGAAAGTCTTACCTAAACTCTTCCGACTGAATATGAGAAAGCCTATAAAACAACGAGCTACTAT
CATTTCTTCATTATAGATTGAGATCTTCTTCGGTTCCGGGTCTTTTCGTTGCATTCACTTACAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGC
ATTTTGGTGCATTCTTCTTCCTTTCCTTGGTCTTTCGTTCCGTCGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCG
CCATGGAATAGATCGACTCAGTTCCCCTTCTTTTCCGGTGCACTCGCTT