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Detailed information on CNT30509771


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697733Solanum lycopersicumOryza sativa31.38790.55328forward
CNT30617621Solanum lycopersicumSesamum indicum17.9471.2193.09188reverse complement
CNT30396203Solanum lycopersicumTriticum turgidum12.444.5292.31130reverse complement
CNT30441793Solanum lycopersicumAegilops tauschii12.428.4591.54130forward
CNT30314546Solanum lycopersicumCamelina sativa19.0822.385200reverse complement
CNT3018193Solanum lycopersicumZea mays15.4658.4888.89162reverse complement
CNT30683778Solanum lycopersicumTriticum urartu9.8332.790.29103reverse complement
CNT30339731Solanum lycopersicumEragrostis tef22.3369.8589.32234forward
CNT30360899Solanum lycopersicumLactuca sativa12.1222.5294.49127forward

Expression of CNT30509771

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKS

Sequence

>CNT30509771
AAAGAACTTAATCAAAAAATAGGAAATACTGCTAGATGGCTACCAGATTAGCAGCAAAGTACGCTTTTAGTTCCTTTTGGCACAACAAAACAAGGTAGTA
ATACGGGAGAAGATGGTCCAGTAATCTTCTCCAGCAGGGTGGCCATAGCGAGATAGAGTGGTGAAACTGGGTTCCAAATAAATAAAAAAAACAGAGCGAG
CGGGGAAGGCAAAAGCTATGACATTGGAATCCGCTTCAAGATAAGTCCCACTCCACTGAATTGGAGAATTCCAGAACACGTATCAGAGAGTGCTCCAATG
GCAGTGGGGCACAATTGAGATAATTTGAGTTATTTATATAAGGAAAAGGAAATAAGTAAGGTAAACAAAAAATCCTTCTTTTTCTTTGAACCCACCCAAT
CAAAAATCCTCCTTTGAGAAAAGGAGAATCGAAAAAATAATATTTTCATACAATATCTTAATTGAATTATATGTATTGATCAATAAATTAAGTTGAATTC
TATATCTACACATACCAAAAACATAGAAAAATCCGAATACCAATCTAATCGATTCTATAGATATTTGGGCTAGAGTTGACAAACAAACAAAACCAGCAAT
ATACTTTATTAGTATCGCATAGAAATCTAAATGGGGCGTGGCCAAGTGGTAAGACAACGGGTTTTGGTCCCGCTATTCATCTGAATGCTACATGAAGAAC
ATAAGCCAGATGACGGAACGGAAAGACCCAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCATATATATATCCACCCATGTGGTAC
TTCATTCTACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGCATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGG
TTTTGATTGATCAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCT
AGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCT