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Detailed information on CNT30314546


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690835Camelina sativaOryza sativa53.452.3594.99479forward
CNT30617621Camelina sativaSesamum indicum30.1102.2788.52270forward
CNT30198622Camelina sativaPisum sativum62.168.5190.84557forward
CNT30502639Camelina sativaNicotiana attenuata23.9721.2985.58215reverse complement
CNT3093954Camelina sativaSolanum tuberosum87.9648.294.8789forward
CNT30177809Camelina sativaSecale cereale32.2238.0895.85289forward
CNT30396203Camelina sativaTriticum turgidum30.3293.1591.54272forward
CNT30509771Camelina sativaSolanum lycopersicum22.319.0885200reverse complement
CNT30555485Camelina sativaOryza glaberrima20.2914.5792.31182forward
CNT30441793Camelina sativaAegilops tauschii30.5559.9691.24274reverse complement
CNT3077259Camelina sativaBrassica juncea75.3675.8798.96676forward
CNT30265789Camelina sativaBrassica rapa30.9934.3296.76278forward
CNT3018193Camelina sativaZea mays26.6486.2890.38239forward
CNT30609661Camelina sativaGossypium raimondii38.820.2494.54348forward
CNT30229782Camelina sativaAnanas comosus25.0810096225forward
CNT30717682Camelina sativaMalus domestica golden16.1661.794.48145reverse complement
CNT30339731Camelina sativaEragrostis tef10.728.6696.8896reverse complement
CNT30360899Camelina sativaLactuca sativa62.2198.9497.13558reverse complement
CNT3054389Camelina sativaAmborella trichopoda37.3513.7694.93335forward
CNT30103751Camelina sativaOryza rufipogon24.7598.6794.14222reverse complement

Expression of CNT30314546

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRQMYAFRLGVVFYGYDSTIYVFCISSKIYFTV*

>peptide 2 (62 aa)
GFLDVDDYIYTDGSYIYRRILLYMVEIPHEWIYRNQNLPNNLCYDLLHPRSSRSVIWLMFFM*

Sequence

>CNT30314546
ACGGCTTTCTGGATGTAGATGATTATATCTATACGGATGGATCTTATATATATCGTAGAATTCTTCTATATATGGTAGAAATACCACACGAGTGGATATA
TAGGAATCAAAATCTGCCGAATAACTTATGTTATGATCTTCTACATCCTAGGTCTTCCCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGAC
CGAATGACTCTATGAAATTACGTCGATACTTCCACATATTATGGGTAACGTAGGAGACATCTCTATTTTTCCCCGGGGGAATCTTTAGAATTACCACTGC
TTAGCTTTCAATTCGCCTCTGACCATCAAATGAAATGTGAATAACCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTATGGTTCTGTCGGTGCTTGAAAC
AATTTTGTCTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTACTGAACTCAATCACTTGCTGCCGTTACTCTTCAGTTTTCTG
TTGAGGTCTATCCTGTAGAGGTACTCAAATTGGATCAGTGATCGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCCAATTACGTAAATCAAATA
GTTCAAACCGCACTCAAAGGTAGGGCATTTCCCATTTTTATAGGAACTTCTGTACCAGAAACAATGGTATCTCCAATTATAGCCCCTCTGGGATGTAAAA
TATATCTCTTCTCACCATCCCCATAGTGTATGAGACAAATGTATGCATTTCGATTAGGGGTCGTATTCTATGGTTACGATTCTACCATATATGTCTTTTG
CATTTCGTCGAAAATCTATTTTACGGTATAGACGCTTATGACCTCCCCCTCTATGCCTTGCGGTAATTATTCCTCTGGCATTACGACCTTTACCACA