Detailed information on CNT30396203


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696313Triticum turgidumOryza sativa68.1514.4197.99199forward
CNT30617621Triticum turgidumSesamum indicum67.817591.41198forward
CNT30198622Triticum turgidumPisum sativum77.0527.6887.11225forward
CNT30502639Triticum turgidumNicotiana attenuata63.3618.3282.16185reverse complement
CNT3093954Triticum turgidumSolanum tuberosum83.2214.8488.89243forward
CNT30509771Triticum turgidumSolanum lycopersicum44.5212.492.31130reverse complement
CNT30555485Triticum turgidumOryza glaberrima67.4715.7798.48197forward
CNT30441793Triticum turgidumAegilops tauschii98.9763.2498.62289reverse complement
CNT30314546Triticum turgidumCamelina sativa93.1530.3291.54272forward
CNT3077259Triticum turgidumBrassica juncea43.4914.2592.91127forward
CNT3018193Triticum turgidumZea mays88.0192.7897.28257forward
CNT30339731Triticum turgidumEragrostis tef34.2529.8598100reverse complement
CNT30360899Triticum turgidumLactuca sativa93.8448.5890.51274reverse complement

Expression of CNT30396203

Peptides detected in this lncRNA

>peptide 1 (51 aa)
ILYESYDEVPHEWIYRKGIQICRIAHVMIFYILGLCVPSSGLCSSCSIQIE*

>peptide 2 (32 aa)
MGNVGDIPIFPRGSELPLLSFQFASDHQIKCE*

Sequence

>CNT30396203
ATCTTATATGAATCATATGATGAAGTACCACATGAGTGGATATATAGGAAAGGAATCCAAATCTGCCGAATCGCTCATGTTATGATCTTCTACATCCTAG
GTCTCTGCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGATCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTATGGGTAACGT
AGGAGACATCCCTATTTTCCCCCGGGGGTCTGAATTACCACTGCTTAGCTTTCAATTTGCCTCTGACCATCAAATTAAATGTGAATAACCCG