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Detailed information on CNT30502639


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696313Nicotiana attenuataOryza sativa22.4816.4481.5227reverse complement
CNT30617621Nicotiana attenuataSesamum indicum11.6844.786.44118reverse complement
CNT30396203Nicotiana attenuataTriticum turgidum18.3263.3682.16185reverse complement
CNT30441793Nicotiana attenuataAegilops tauschii18.2240.2682.61184forward
CNT30314546Nicotiana attenuataCamelina sativa21.2923.9785.58215reverse complement
CNT3018193Nicotiana attenuataZea mays8.8132.1387.6489reverse complement
CNT30339731Nicotiana attenuataEragrostis tef8.1224.4886.5982forward
CNT30360899Nicotiana attenuataLactuca sativa23.8642.7383.4241forward

Expression of CNT30502639

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LSTDRTGSPLFQREENELFTFHLTVRDKLKVKPWKF*

>peptide 2 (44 aa)
MSPTQNMWNYRHKFIVIRSECYMKNISQMTERVDPKCSIDGRFL*

Sequence

>CNT30502639
TTTTAAGTACCGACAGAACCGGAAGCCCATTATTTCAAAGAGAGGAGAATGAGTTATTTACATTTCATTTGACGGTCAGAGATAAATTGAAAGTTAAGCC
GTGGAAATTCTAAAGATTCCTCGGGGGAAATAGAGATGTCTCCTACCCAAAATATGTGGAACTATCGACATAAATTTATAGTCATTCGGTCAGAATGCTA
CATGAAAAACATAAGCCAGATGACAGAACGGGTAGACCCAAAATGTAGTATTGACGGCAGATTTTTGTAGAGAAGATAATGCGTTCCTGAATATGCTCTA
TTCTACAGTTTGGATAGTATCCTTGATGAAATATTAAAATTATGAGTCACGATTTACTGCCAAGTTTTTCAACAATGAAGCTGAGATATCTCGCTCATAT
TTAGATATCTGAGGTAGGATTTGTCCTTTGCAATATTTTATTATTTAGACCAAATAATATTGTATAGTGGTGGCTTTATTTTGTTAGAGTAGAGAGTGAA
GATTAGCAACAGGGAAGTATGGGGTCTAGATAGCGGCTCTAGGGTTTTTCCTCTATCAATGGTGATGAGAAATTTGTGTGTGAATGTATGGTAACATGTA
GAGTTAGGCGCGAGTGAATTCTGTGCGTATCACGAGTTTAAATAGTTGCGCCTCTGGGGGTGAATTTTGTATCAGACCCAAATTAAATGTGCCTGGTGTT
AATCTTGAAGAACGGAACTGGAATTTGAGTGTATAATTTATTTATTTTTGGTTTGAGAGAGTATAAAGTTATGTTACATGCACAGTGTGAGAGTTGTGAG
GTGTAAAATGTAAAAATAGTGCATGCGAAAGAATCTTTGAGTTAGATAAAATTTAGTTTGTTATAAAAGTTCTAGCCAATAGAGCTAGATGGCATGATTT
CATTTGTTTTCTTTTAAGCTAATAACACAAAACTCAAGAACTTTGTTGTTATAAAGTACTATATCTGACTATTCTTGTACTTCTCAACTTTCTCAAAAAA
TAAAGTTAAC