Detailed information on CNT30261535


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315642Brassica rapaCorylus avellana23.6814.9491.6772forward
CNT30547369Brassica rapaIpomoea triloba23.039.429070forward
CNT30618209Brassica rapaSesamum indicum23.3611.3192.9671reverse complement
CNT30382680Brassica rapaManihot esculenta22.722.7789.8669forward
CNT3043300Brassica rapaPrunus dulcis34.2133.8885.58104forward
CNT30166212Brassica rapaPistacia vera22.76.6988.4169reverse complement
CNT3096457Brassica rapaSolanum tuberosum20.7220.6688.8963forward
CNT30544156Brassica rapaBrassica napus100100.3397.04304forward
CNT30235645Brassica rapaBrassica oleracea100.9910092.18307forward
CNT30509538Brassica rapaSolanum lycopersicum20.3925.9490.3262forward
CNT3063020Brassica rapaArabidopsis lyrata100.9910085.99307forward
CNT30210362Brassica rapaHelianthus annuus2524.7686.8476forward
CNT30479862Brassica rapaArabidopsis halleri100.6610086.27306forward
CNT30154558Brassica rapaPrunus persica23.6823.5388.8972forward
CNT30704539Brassica rapaPrunus avium34.219.785.58104reverse complement

Expression of CNT30261535

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRQAGFTEQRLLPALCSGRITARRHSDLLWPAGSFSAEPPI

Sequence

>CNT30261535
GTCGAGCTAAGTAACGAGAGCTTGTGACCCGAGTGGGGACAATAAGATGGTGGAACACTGGTTTGGTCCACGGGTCGGGTCTGCTGTGGCAAGTTTCTGA
GCTGCCCTGTCCAAGCGGAGAGTTATCTGTCTGGTTTGAGCGAAGGCTCGAATTAGGTGGGTGCTAAAGTCGGAGGGCAATGCGTCAGGCTGGTTTCACA
GAGCAGCGACTACTTCCCGCTCTCTGCAGTGGACGGATAACGGCTCGGCGCCACTCAGACCTGCTATGGCCTGCTGGTTCGTTCTCAGCTGAACCACCAA
TTTT