Detailed information on CNT30353455


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Eragrostis tefOryza sativa22.6333.0789.7165reverse complement
CNT30523972Eragrostis tefSetaria italica21.2640.0594.19155reverse complement
CNT30371426Eragrostis tefOryza glumipatula24.2818.7990.96177forward

Expression of CNT30353455

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MILHLIVDISVTLSLSLSENTVLLCFCLSLGPEAKSPWW*

>peptide 2 (58 aa)
ILQVKIDGRVRWKVGSWISGHYHLFVTCPAFLVTGGGNGAPGASGFKFQTTTYCHVEV*

>peptide 3 (65 aa)
PPGQDRRPRQVEGGQLDLGALPPVRHLPGVPRHRRRQRRAGGQRVQVPDHHILPRRGLGSHCWRR*

>peptide 4 (68 aa)
SSRSRSTAASGGRWAAGSRGTTTCSSLARRSSSPAAATARRGPAGSSSRPPHTATSRSRISLLAAVKR*

Sequence

>CNT30353455
ATCCTCCAGGTCAAGATCGACGGCCGCGTCAGGTGGAAGGTGGGCAGCTGGATCTCGGGGCACTACCACCTGTTCGTCACTTGCCCGGCGTTCCTCGTCA
CCGGCGGCGGCAACGGCGCGCCGGGGGCCAGCGGGTTCAAGTTCCAGACCACCACATACTGCCACGTCGAGGTCTAGGATCTCACTGCTGGCGGCGGTGA
AGAGGTAGGATCTCAATTCTTGTTACCAGCCGGCCGTTGAGTCTGCCTGTTGCCTGTCTCCATGGCGAGCGGAAAGCAGAGCATCAAGGCAGAGTCGTTC
AGTCAGGTCAGGGGGTAATAATCGAATCAGCAATATTATTCGATAGTTATTCATACTGCTGCAGTTATGTTGATTATAAATGTAATTTGTAAAGGTGGTT
AATTAGTTTTCCTTAGAGCTAAACACGACGGTGCTATCTTTCTCCATGCTAGTAGTACTACACTGTTAAGAAGCTTGAAGTGTTAATAAACCTTTTTTGA
GGCTCAATTGAATGGGTATTTGACTGCACGGTTTTGGGCCTGATGATTCTGCATTTGATCGTTGACATTTCGGTTACTCTCTCTCTCTCTCTCTCTGAAA
ATACTGTTCTTCTATGCTTCTGCCTTTCTCTTGGTCCTGAAGCCAAATCACCTTGGTGGTAGCAGCAGCAGTAGTTGCCTTCCTTTTGATGATGGAACAT
GTGTTGGGGTTGTAGCTTGATCATGTGTG