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Detailed information on CNT30578381


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697688Oryza barthiiOryza sativa28.9772.3493.91361forward
CNT30523972Oryza barthiiSetaria italica6.6621.4596.3983forward
CNT30318404Oryza barthiiCorylus avellana7.8720.9483.6798forward
CNT30371426Oryza barthiiOryza glumipatula58.7577.7196.72732reverse complement
CNT30117133Oryza barthiiOryza nivara8.8334.9297.27110forward
CNT30592989Oryza barthiiEragrostis curvula5.8636.3294.5273reverse complement

Expression of CNT30578381

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MRAMMPTRMARTTRTVMNRRHPCRKSSSPCLPQSFPMMLLASWFLGGLFSSTLH*

>peptide 2 (52 aa)
NLTFQVVPWIWLLPTNKHAYIIPKKPVDPTPLICMIKMSYHQHHSKKKCMTT*

Sequence

>CNT30578381
AATCTCACATTTCAAGTGGTGCCTTGGATCTGGTTGTTGCCAACAAACAAACATGCATACATAATTCCAAAAAAGCCAGTTGATCCAACACCTCTAATTT
GCATGATCAAAATGAGCTATCACCAACATCACTCCAAAAAGAAATGCATGACCACATGAAAAAAAGAGAGAGGTAGAATTAAAATAAAAATACAGAATTT
GACAAATAACTAAACATGCATTTCTCCTTAATTAAGACAAAAAAGGATTATTAACAATTAAGCTAATAATCAAGAGAGCATTATAATTAACCATACCATT
AATCCTACTTAAATTGCCTCTCCACCTCCTTTACATTTTGTAACCCACATAATAATTCATTATTACCACCATCATCTCTTTTTCACTATGGACACACAAG
AACACCACCACCTCCAAGAAATCAAACCTACCTCGCCGGCGACTAGCCGGAGATAGCAGATTCCGGCGGCGGCGGCGGGCACAGTAGTAGATCATAACAT
AACTAGCTTAGCTAGACCTCGACGTGGCAGTAGGTGGTGGTCTGGAACCTGAAGCCGCTGGCGCCGGGGGAGCCATTGCCGCCGGAGGTGACGAAGAGGT
GGTAGTGGCCGGAGATCCAGCTGCCGACCTTCCACCGGACGCGGCCGTCGATCTTGACCTGGAGGATGAGGTAGCCCGCCTGGCAATCCTGCGAGATGGC
GTCGGCGAGGCGGCGACGGTGATCTGCTGGTACTTGTAGGAGGCGTAGACGTCGAGGCGGTCGTAGTAGACGCCGACGCGGTCGTTGGGGTTGCGGGAGG
CGACGGTGACCTGGATGGTGGTGGAGAGGACGCCGCCGGCGGTGGAGGAGGAGTTGGAGAGGTAGAAGCGAGGGTGGGTGGGGCGGAGGACGAGGTAGAC
GATGAGGGCGATGATGCCGACGAGGATGGCGAGGACGACGAGGACGGTGATGAATCGCCGGCACCCCTGCCGGAAGTCGTCGTCGCCGTGCTTGCCGCAA
TCCTTCCCCATGATGCTTCTAGCTTCTTGGTTTCTTGGTGGACTCTTCTCTTCTACTCTACACTAGTCTTTGCTTTGGTTTGGTTTGGTTTTGCTTGTAA
TCCTTTGCTTAATTTGAGCTTAGTGAGATGAGATGAGTGGAGAGGAGAGAGAAGAGGAAAGGTGGTGGTGGTGTTAGAGAGAGAGAGGGGGGAGTGGGGT
AGATGAAGAAGATGATGGGGGAGGTGTAGAGATTATGTGGGGAAGA