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Detailed information on CNT30290078


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-63

BLAST vs NONCODE:
NONBRAT002959, E-value = 9e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Triticum aestivumSetaria viridis34.4244.6588.59263forward
CNT30520532Triticum aestivumSetaria italica60.8655.6986.67465forward
CNT30708157Triticum aestivumGlycine max34.5529.484.47264forward
CNT30221568Triticum aestivumHordeum vulgare38.3527.9897.61293forward
CNT30387274Triticum aestivumTriticum turgidum39.1466.7499.33299forward
CNT30554380Triticum aestivumOryza glaberrima20.5514.2191.08157forward
CNT30244040Triticum aestivumAvena sativa63.4862.7494.64485forward
CNT30659169Triticum aestivumTriticum dicoccoides47.7746.9299.18365forward
CNT30132672Triticum aestivumLolium perenne38.3552.5193.52293forward
CNT30340460Triticum aestivumEragrostis tef37.4333.6588.81286forward
CNT30596550Triticum aestivumOryza meridionalis53.2750.1286.24407forward
CNT30370789Triticum aestivumOryza glumipatula32.3317.9591.09247forward
CNT30328621Triticum aestivumAsparagus officinalis12.0430.8790.2292forward
CNT30148661Triticum aestivumBrachypodium distachyon28.5346.7891.74218forward
CNT30496270Triticum aestivumDigitaria exilis21.9917.0287.5168forward
CNT30116923Triticum aestivumOryza nivara53.5349.1690.71409forward
CNT30112169Triticum aestivumFicus carica25.6511.6979.59196forward

Expression of CNT30290078

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRPFCGAGSASRVPRNALAAAATDEAMAARSS*

>peptide 2 (57 aa)
MVVCSGSLRWVAQLLRGPLPVAAACTAKPRKATMASMAQRPWMSSHSRNLWRPNTSA*

>peptide 3 (45 aa)
LINKGSVRYPLIHHSSYKTKARSLHGRAFVHFAAELTEIARPPTT*

>peptide 4 (34 aa)
INQQRICAIPSHPSLVIQNQSTFVTRTRVRPFCC*

>peptide 5 (34 aa)
MISPARFWARFWSRESTSYCRYSAGFPRPKGSKP*

Sequence

>CNT30290078
CATTAATCAACAAAGGATCTGTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCAAAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGC
TGCTGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAGGAACCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAG
TTGTTGAGAGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGCATGGCCCAGCGACCGTGGATGAGCTCGCACT
CGCGGAACCTCTGGAGGCCGAACACCTCGGCGTAGGGCTGGAACGGGGTGGACTTGACGTCGGCGTCCTCGAACCGGGTGCCGATGATCTCGCCCGCCAG
GTTCTGGGCCAGGTTCTGGTCCAGGGAGTCCACGTCGTACTGCAGGTACTCCGCGGGCTTCCCAAGGCCGAAGGGGTCGAAGCCGTAGTCGCCGACGAGC
GTCCCGTCGAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGGCGCCTTGGCCTTCTTCGGCGGGGCCTTCTTCTTGC
CGAAGCCGAACCGCGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTCCCGAGGAACGCGCTCGCCGCGGCGGCCACCGACGAAGCCAT
GGCTGCTCGCTCCTCCTAGCTTGTCCTCCTCGGCCTTTGCGTGCGTTGAGGTGGCGGGTGGTGG