Detailed information on CNT30116923


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Oryza nivaraSetaria viridis32.6946.1891.91272forward
CNT30520532Oryza nivaraSetaria italica35.3435.2192.18294forward
CNT30640440Oryza nivaraNymphaea colorata19.4724.2586.42162forward
CNT30708177Oryza nivaraGlycine max28.3722.4384.32236forward
CNT30290078Oryza nivaraTriticum aestivum49.1653.5390.71409forward
CNT30221568Oryza nivaraHordeum vulgare35.3428.0889.8294forward
CNT30562752Oryza nivaraActinidia chinensis28.6118.8182.77238forward
CNT30244040Oryza nivaraAvena sativa34.9837.6590.38291forward
CNT30261767Oryza nivaraBrassica rapa13.140.8282.57109forward
CNT30452520Oryza nivaraSaccharum spontaneum35.3419.6191.16294forward
CNT30132672Oryza nivaraLolium perenne35.3452.6988.44294forward
CNT3042238Oryza nivaraChlamydomonas reinhardtii8.5322.4788.7371forward
CNT30229721Oryza nivaraAnanas comosus35.3412.5288.44294forward
CNT30340460Oryza nivaraEragrostis tef35.134.3592.12292forward
CNT30328621Oryza nivaraAsparagus officinalis11.4231.8887.3795forward
CNT30148661Oryza nivaraBrachypodium distachyon26.0846.5786.18217forward
CNT30581232Oryza nivaraEchinochloa crusgalli20.9124.490.8174forward
CNT30496270Oryza nivaraDigitaria exilis20.9117.6389.66174forward
CNT30556732Oryza nivaraPanicum hallii21.1522.5692.05176forward

Expression of CNT30116923

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MISPALFLARFWSSESSSNCRYSAGFPRPNGSKP*

>peptide 2 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 3 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 4 (42 aa)
MCIHSHTHLVKYQDRSIDVQVDALIHHLGCSYITNHHHASRH*

>peptide 5 (58 aa)
VKSMQCAYVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 6 (60 aa)
MVVWSGSLRWVAQLLRGPLPVAAACTAKPRKATMARVASMAQRPWMSSHSRKRWRPNTSV*

Sequence

>CNT30116923
GTAAAGTCTATGCAGTGTGCATATGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGATCGATGTACAAGTGGATGCATTAATTCAT
CATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATGAC
CTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAACGCATCGATCCCGTTTGAATTGCGCGCG
AAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGGGGCCCCTTGCCG
GTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCT
GGAGGCCGAACACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCGAACCGGGTGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAG
GTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCGCCGGCTTCCCGAGGCCGAACGGGTCGAAGCCGTAGTCGCCGACGAGCGACCCGTCCAGG
TAGTCCGGCGCCACCGCGCCGGGGAACCACAGCGGCCTGAACGTGCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGCTCCTCTCCTTCTTCTCCTTC
TTCGAGAATATGTGGGTGGTGGTGAGGGGGGG