Detailed information on CNT30673694


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 3e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30350310Setaria viridisEragrostis tef43.229.0793.5200forward
CNT30497204Setaria viridisDigitaria exilis46.4440.1990.23215forward

Expression of CNT30673694

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MNHAHITSRFHYNTTGSNALVELEAGEDVVVDGDGEHGEPAVLDLLELELLHLLLGLSEPERVEERAAGVGRVAGAGEELLEAEEAARRA*

>peptide 2 (36 aa)
MASMASLPFLISLSLSSFISFSVFPNPSGLKSGPPG*

>peptide 3 (31 aa)
MDPLLVACVQLPTLWYLRFGRRGAQKKRRQKY

Sequence

>CNT30673694
TGTACAATGATTTACCATGTGTGATACAATTTCTGGTCTCAATTAACAGGATCGATTACTAATTTGTTATAAGCAGCGAGTAGGCCATGAATCATGCACA
CATCACGTCTCGCTTCCACTACAACACAACAGGCAGCAATGCTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACGGGGATGGCGAGCATGGC
GAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGGTCTTTCCGAACCCGAGCGGGTTGAAGAGCGGGCCGCCGGGGTAGGAC
GGGTCGCCGGAGCCGGCGAGGAACTTCTCGAGGCCGAGGAAGCGGCGAGGAGAGCCTGAGCCGCCATGGATCCCTTGCTTGTTGCTTGTGTTCAGCTGCC
GACTCTCTGGTATCTGCGGTTCGGGAGGAGAGGGGCGCAGAAGAAGAGGCGCCAAAAATATGT