Detailed information on CNT30100474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Oryza rufipogonOryza sativa38.7627.6510081forward
CNT30674108Oryza rufipogonSetaria viridis21.0516.9993.1844forward
CNT30595683Oryza rufipogonOryza meridionalis40.676.5596.4785forward
CNT30369533Oryza rufipogonOryza glumipatula54.0720.21100113forward
CNT30575228Oryza rufipogonOryza barthii53.118.76100111forward
CNT30497204Oryza rufipogonDigitaria exilis21.058.2293.1844forward
CNT30115627Oryza rufipogonOryza nivara53.116.48100111forward

Expression of CNT30100474

Peptides detected in this lncRNA

>peptide 1 (31 aa)
RDKLANRSMRPCVQISWSTNLHVTPTPYTHA*

>peptide 2 (40 aa)
RQASKSIHATMRANQLEHKFTCYTHTLHPCIIIHRIYIHN*

Sequence

>CNT30100474
AGAGACAAGCTAGCAAATCGATCCATGCGACCATGCGTGCAAATCAGTTGGAGCACAAATTTACATGTTACACCCACACCCTACACCCATGCATAATAAT
ACATCGTATATACATACATAATTAAAAACTCGTAATTAATTAAATACGTAGTTGATGGCATCTCTAATGGAACTTGAGGCTGGTGAGGATGTTGTTGTGG
ACGGGATCA