Detailed information on CNT30488386


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515273Olea europaeaJuglans regia28.6332.9281.52211forward
CNT30371945Olea europaeaArabidopsis thaliana13.322.7985.7198forward
CNT30380725Olea europaeaManihot esculenta29.7237.1282.19219forward
CNT30630888Olea europaeaVigna unguiculata20.2222.0182.55149forward
CNT30710333Olea europaeaGlycine max26.0522.0782.29192forward
CNT3094391Olea europaeaSolanum tuberosum20.4934.5584.11151forward
CNT30171560Olea europaeaTrifolium pratense24.4222.3382.78180forward
CNT30145740Olea europaeaMedicago truncatula31.4828.8282.33232forward
CNT3061459Olea europaeaArabidopsis lyrata17.7722.3583.97131forward
CNT30651207Olea europaeaRosa chinensis21.8523.7884.47161forward
CNT30358694Olea europaeaLactuca sativa23.8839.5582.95176forward
CNT30411270Olea europaeaPapaver somniferum19.6725.8586.21145forward
CNT30174623Olea europaeaVigna angularis20.2217.4983.22149forward
CNT30724196Olea europaeaLupinus angustifolius21.0318.6383.87155forward
CNT3049718Olea europaeaCucumis sativus20.0828.3581.76148forward

Expression of CNT30488386

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MSHLLTSKLDLDRADIFTYGSHVLLDSLAIKVHILRIDTILRVRILHLTIRKLCKIGN*

>peptide 2 (39 aa)
MMQATEGGLIPQHCYPIVAKEGWGKDVGLSCQGHERTWCC

Sequence

>CNT30488386
GTGCTAATAGAAAATTAACATACAAACATTAAATAGTCCAACCAATGTTTGCGGCATCGATAAAATAAAAGTGAGATGAAGATCAATTAATTACAGAATC
GCGTCACATAATTAATTTCCGTCGCCTCATATGTCACACTTGCTTACCAGTAAATTAGACCTCGATCGAGCTGACATTTTTACCTATGGATCGCATGTTC
TTCTCGACTCCTTGGCGATCAAGGTTCACATTCTCAGGATAGACACCATCCTTAGGGTGCGAATATTGCACCTCACCATTAGGAAACTCTGTAAAATTGG
TAATTAATCTTGTACTTGGACCTCAATCTAGTCCCAAGAGCCAAACACTATTCTTTCCTAGCCAATTTCAATAGGTTAGGTCCCTGCCGCATAACGGCGG
CGCCACCAGTTGGCATTTCAGAAATTTGTTCCTTAGGTGCAATAGTCCACTGGTGCTACCACCAAAAATTTTGGTGATGGGGTGTTCAGGTCCAGTTCCG
GAGGAGTGAGGTCGATCGGAGCCTCTTTCTTCACCTCTTTCGTGGCAGGCGCTTCCTCGGCCATGGCCCTTATAGGACTATGTGCCATGGTGGACTTGAT
CGGCCTAGGACTAATGAATGATGCAAGCGACTGAGGGAGGATTGATTCCACAGCATTGCTACCCGATTGTCGCCAAAGAGGGCTGGGGTAAAGACGTAGG
CTTGAGTTGCCAAGGCCATGAAAGAACTTGGTGTTGC