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Detailed information on CNT3094391


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639255Solanum tuberosumNymphaea colorata22.8827.6285100forward
CNT30517240Solanum tuberosumJuglans regia33.1848.0186.21145forward
CNT30376473Solanum tuberosumArabidopsis thaliana50.831.6279.73222forward
CNT30269143Solanum tuberosumChenopodium quinoa34.5519.4384.11151forward
CNT30380094Solanum tuberosumManihot esculenta52.421.284.28229forward
CNT30403648Solanum tuberosumBeta vulgaris25.8610.1983.19113forward
CNT30630888Solanum tuberosumVigna unguiculata45.5429.3982.41199forward
CNT30488386Solanum tuberosumOlea europaea34.5520.4984.11151forward
CNT30505774Solanum tuberosumNicotiana attenuata20.8219.0485.7191forward
CNT30710396Solanum tuberosumGlycine max50.5745.1981221forward
CNT3089114Solanum tuberosumVigna radiata22.210.0883.5197forward
CNT30171560Solanum tuberosumTrifolium pratense26.5414.3985.34116forward
CNT30145708Solanum tuberosumMedicago truncatula32.0418.1886.43140forward
CNT3061459Solanum tuberosumArabidopsis lyrata50.837.8881.08222forward
CNT30651207Solanum tuberosumRosa chinensis56.0636.1983.67245forward
CNT30358716Solanum tuberosumLactuca sativa33.1828.2786.9145forward
CNT30410573Solanum tuberosumPapaver somniferum52.425.4784.28229forward
CNT30570681Solanum tuberosumVitis vinifera34.110.985.91149forward
CNT30174623Solanum tuberosumVigna angularis45.5423.3681.41199forward
CNT30113105Solanum tuberosumFicus carica41.8822.8881.97183forward
CNT30725909Solanum tuberosumLupinus angustifolius38.930.2584.71170forward
CNT3049718Solanum tuberosumCucumis sativus35.2429.581.82154forward

Expression of CNT3094391

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VVSNKSYIQRMHYIITKIINNYNIIKSAQNTTP*

>peptide 2 (29 aa)
MQILHLTIGEYPVKLVVNLVFGSQPCTKS*

Sequence

>CNT3094391
TGTAGTGTCAAATAAAAGTTACATTCAAAGGATGCACTACATAATCACAAAAATCATTAACAATTACAATATCATAAAAAGTGCACAAAATACAACACCT
TAAATATCATACACTTGTTTCCCAGTAAACTTGACTTCAATAGCACTCTTGTTCTTTCCAATGGATCTAAAGTTCTGACCAACTCCTTCACGCCCTGGGT
TCACCTTTTCAGGGTACACACCATCTTTGGGATGCAAATATTGCACCTCACCATTGGGGAATACCCTGTAAAACTGGTAGTTAATCTTGTATTTGGATCT
CAACCTTGTACCAAGAGCTAAGCACTGTTCTTTCCTGGCCAATTTCAACAAATTGGGGATTGTTTCCATGGAGCGGTGGATTTGGGGACGGAGAGAGCAG
GGGTGAAGAGGGAAGCTTGAGTTGCCATGGCCATTAT