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Detailed information on CNT30651207


BLAST search results

BLAST vs Swiss-Prot:
sp|P29302|PSAD_NICSY, E-value = 6e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695219Rosa chinensisOryza sativa16.121.0882.57109forward
CNT30515464Rosa chinensisJuglans regia35.0121.3588.61237forward
CNT30376473Rosa chinensisArabidopsis thaliana22.7521.9484.42154forward
CNT30269143Rosa chinensisChenopodium quinoa20.2417.6386.13137forward
CNT30380945Rosa chinensisManihot esculenta36.1933.1588.57245forward
CNT30630888Rosa chinensisVigna unguiculata34.7134.7185.53235forward
CNT30488386Rosa chinensisOlea europaea23.7821.8584.47161forward
CNT30710396Rosa chinensisGlycine max33.3846.2287.61226forward
CNT3094391Rosa chinensisSolanum tuberosum36.1956.0683.67245forward
CNT30145708Rosa chinensisMedicago truncatula29.9926.3684.73203forward
CNT3061459Rosa chinensisArabidopsis lyrata22.7526.2885.06154forward
CNT30228866Rosa chinensisAnanas comosus27.6221.479.68187forward
CNT30619829Rosa chinensisCajanus cajan33.5323.0285.46227forward
CNT30356274Rosa chinensisLactuca sativa33.5334.8284.58227forward
CNT30410573Rosa chinensisPapaver somniferum34.5626.0385.47234forward
CNT30570681Rosa chinensisVitis vinifera34.7117.1988.94235forward
CNT30174623Rosa chinensisVigna angularis34.8627.786.02236forward
CNT30113105Rosa chinensisFicus carica33.8328.6287.34229forward
CNT30724196Rosa chinensisLupinus angustifolius32.7926.6887.84222forward
CNT3049718Rosa chinensisCucumis sativus21.8628.3584.46148forward

Expression of CNT30651207

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGLGAAVERVSDFGAMKVEVTDCFHGAEAVGVKRVA*

>peptide 2 (46 aa)
MSYTCFPVNLTSIGFTFFPMDLKLSPTPWRPGFTFSGYTPSFGCKY*

>peptide 3 (29 aa)
TNSQQVHYKLLHQMNQLMIIIICHTLASR*

Sequence

>CNT30651207
CACAAATAGTCAACAAGTACATTACAAATTATTACACCAAATGAACCAACTGATGATCATAATCATATGTCATACACTTGCTTCCCGGTGAACTTGACCT
CAATTGGGTTCACATTCTTCCCAATGGACCTGAAGTTAAGCCCCACTCCTTGGCGCCCTGGGTTCACCTTCTCAGGGTACACTCCATCTTTTGGGTGCAA
ATACTGAACCTCACCATTAGGGAACACCCTGTAAAACTGGTACTTGATCTTGTACTTGGACCTCAGTCTTGTCCCAAGAGCCAAACACTGCTCTTTCCTG
GCCAGCTTCAACAAGTTAGGTGATCACGTAGAACTCTTCCTCTTGGGCCTTGCGGAGAAGCCCACCGGTGCTGCCGCCGAAGATTGGGGATGGGGTTGTT
GGGTCCAGTTCCGGCGGGGTGAAGCCAACCGGAGCTTCGGCCTCCTTTGTGGGTGCCACGGTTTTCTCTTCAGCAGCTGCGATCCTCATGGGTCTTGGCG
CTGCGGTGGAGAGGGTCAGTGACTTTGGGGCCATGAAGGTGGAGGTGACTGACTGTTTCCATGGTGCTGAGGCGGTTGGGGTGAAGAGGGTCGCTTGAGT
TGCCATGGCCATGACTTTGGGCAGGGAGAGAGAAGAGACGGAGAGTTGTGGTGTGGTACTACTGAATGTTTTTTGGG