« Back to Papaver somniferum search


Detailed information on CNT30411270


BLAST search results

BLAST vs Swiss-Prot:
sp|P12372|PSAD_SOLLC, E-value = 2e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639255Papaver somniferumNymphaea colorata17.8327.6287100forward
CNT30403648Papaver somniferumBeta vulgaris44.7422.6385.26251forward
CNT30630495Papaver somniferumVigna unguiculata51.1650.6281.53287forward
CNT30197643Papaver somniferumPisum sativum9.9825.2387.556forward
CNT30488386Papaver somniferumOlea europaea25.8519.6786.21145forward
CNT30505774Papaver somniferumNicotiana attenuata43.6751.2682.45245forward
CNT3089114Papaver somniferumVigna radiata51.1629.8380.49287forward
CNT30171560Papaver somniferumTrifolium pratense53.4837.2284.67300forward
CNT30477818Papaver somniferumArabidopsis halleri34.5841.4581.44194forward

Expression of CNT30411270

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SWVHLLWVHTIFRMKILNFTIRENPVKLVLDLVLGSQSSSKS*

Sequence

>CNT30411270
TCCTGGGTTCACCTTCTCTGGGTACACACCATCTTTAGGATGAAGATATTGAACTTCACCATTAGGGAAAACCCTGTAAAATTGGTACTTGATCTTGTAC
TTGGATCTCAATCTAGTTCCAAGAGCTAAACACTGTTCTTTCCTAGCCAACTTGAGCAAGTTAGGTCCTTGTCTCATGATAGCTGCACCTCCAGTTGGCA
TTTCAAATACTTGTTCTTTAGGAGAATCCCAAGTGATCACGTAGAACTCCTCTACTTGAGCTTTACGCAACAATCCACCAGTACTACCTCCGAAGATTGG
AGATGGTGTGTTTGGGTCCAATTCTGGTGGAGTGAAACCTGCTGGGGCTTCTTTCGCTGGAGCTTCTGTCTTTCCTTCAGCAGCTGAGGATTGTTTCCAT
GCTAAATTGCTTGATTTTGAGGTGGAAAGAGTTGGGGTAAAAAGAGCTGCCTGAGTTGCCATAGCCATGGAATATTCAAGAGGTAGTTGATTTCCTCGAG
CTGCAGTAGGTTGTGGTAAGGTCACAGAGAAGATGTAAAGAAGAGTGTTTTAAGAAATTTG