« Back to Lactuca sativa search


Detailed information on CNT30358694


BLAST search results

BLAST vs Swiss-Prot:
sp|P12353|PSAD_SPIOL, E-value = 3e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371945Lactuca sativaArabidopsis thaliana63.1565.3582.21281forward
CNT30269143Lactuca sativaChenopodium quinoa55.2831.6682.11246forward
CNT30380725Lactuca sativaManihot esculenta63.3747.884.04282forward
CNT30403648Lactuca sativaBeta vulgaris51.0120.4782.82227forward
CNT30488386Lactuca sativaOlea europaea39.5523.8882.95176forward
CNT30297782Lactuca sativaTriticum aestivum27.6426.0684.55123forward
CNT30393705Lactuca sativaTriticum turgidum30.5614.9583.82136forward
CNT30171560Lactuca sativaTrifolium pratense46.2925.5683.5206forward
CNT30440464Lactuca sativaAegilops tauschii30.5616.3983.09136forward
CNT30249341Lactuca sativaAvena sativa27.6420.3384.55123forward
CNT30664930Lactuca sativaTriticum dicoccoides27.6438.3284.55123forward
CNT3061459Lactuca sativaArabidopsis lyrata63.8248.4682.39284forward
CNT3010182Lactuca sativaZea mays28.7616.3185.16128forward
CNT30344027Lactuca sativaEragrostis tef27.6415.2282.93123forward
CNT30477818Lactuca sativaArabidopsis halleri42.9240.8182.2191forward

Expression of CNT30358694

Peptides detected in this lncRNA

>peptide 1 (43 aa)
PHVLTHPLPAGVNFFRVHSIFGVQILNFPIRKHPVKLVFNLVF*

Sequence

>CNT30358694
CCTCATGTTCTGACCCACCCCCTGCCGGCCGGCGTTAACTTTTTCCGGGTACACTCCATCTTTGGGGTGCAAATATTGAACTTCCCCATTCGGAAACACC
CTGTAAAACTGGTATTTAATCTTGTATTTTGACCTCAATCTTGTCCCAAGAGCCAAACACTGTTCTTTTCTCGCTAATTTCAACAGATTCGGTCCTTCCC
TCATGATGGCGGCGCCGCCGGTGGGCATTTCGAAGATCTGTTCTTTTGGCGATTCCCATGTGATGACGTAGAACTCCTCCACCTGAGCTTTTCTGAGCAG
GCCGCCGGTGCTTCCGGCGAAGATTGGAGATGGGGTGTTGGGGTGCGAAAAAGGAAGCTTGGGTAGCCATGGCCATCGGTGGTGGTGGGTGATTTGAATC
AAGAAGACGAAGAATTTTGTGAAGTTGGGTGGCGATGGTGGTGGG